Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC13.43□□□□□ -0.26
HOXD3P31249 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
HOXD3P31249 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC13.43□□□□□ -0.26
HOXD3P31249 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
HOXD3P31249 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
HOXD3P31249 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC13.43□□□□□ -0.26
HOXD3P31249 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
HOXD3P31249 PSMA1-209ENST00000530457 1527 ntTSL 5 BASIC13.43□□□□□ -0.26
HOXD3P31249 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC13.43□□□□□ -0.26
HOXD3P31249 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
HOXD3P31249 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC13.43□□□□□ -0.26
HOXD3P31249 AC134043.2-201ENST00000624206 2238 ntBASIC13.43□□□□□ -0.26
HOXD3P31249 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC13.43□□□□□ -0.26
HOXD3P31249 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC13.43□□□□□ -0.26
HOXD3P31249 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC13.43□□□□□ -0.26
HOXD3P31249 CREBBP-201ENST00000262367 10803 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
HOXD3P31249 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
HOXD3P31249 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
HOXD3P31249 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
HOXD3P31249 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC13.42□□□□□ -0.26
HOXD3P31249 EFCAB14-201ENST00000371933 5767 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
HOXD3P31249 PLCB2-201ENST00000260402 4616 ntAPPRIS P3 TSL 2 BASIC13.42□□□□□ -0.26
HOXD3P31249 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC13.42□□□□□ -0.26
HOXD3P31249 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC13.42□□□□□ -0.26
HOXD3P31249 KDM6A-212ENST00000543216 5655 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
HOXD3P31249 JMJD1C-202ENST00000399262 8666 ntAPPRIS P3 TSL 5 BASIC13.42□□□□□ -0.26
HOXD3P31249 SIGLEC16-201ENST00000599858 1437 ntBASIC13.42□□□□□ -0.26
HOXD3P31249 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC13.42□□□□□ -0.26
HOXD3P31249 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
HOXD3P31249 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC13.42□□□□□ -0.26
HOXD3P31249 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
HOXD3P31249 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC13.42□□□□□ -0.26
HOXD3P31249 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC13.42□□□□□ -0.26
HOXD3P31249 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
HOXD3P31249 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC13.42□□□□□ -0.26
HOXD3P31249 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC13.42□□□□□ -0.26
HOXD3P31249 UNC93B6-202ENST00000528242 690 ntBASIC13.42□□□□□ -0.26
HOXD3P31249 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC13.42□□□□□ -0.26
HOXD3P31249 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC13.42□□□□□ -0.26
HOXD3P31249 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC13.42□□□□□ -0.26
HOXD3P31249 MIR3687-2-201ENST00000577708 61 ntBASIC13.42□□□□□ -0.26
HOXD3P31249 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
HOXD3P31249 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
HOXD3P31249 CCL3-204ENST00000613922 778 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
HOXD3P31249 MIR3687-1-201ENST00000614492 61 ntBASIC13.42□□□□□ -0.26
HOXD3P31249 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC13.42□□□□□ -0.26
HOXD3P31249 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC13.42□□□□□ -0.26
HOXD3P31249 AL022326.1-202ENST00000641533 845 ntBASIC13.42□□□□□ -0.26
HOXD3P31249 AC107918.4-202ENST00000641623 219 ntBASIC13.42□□□□□ -0.26
HOXD3P31249 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC13.42□□□□□ -0.26
HOXD3P31249 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
HOXD3P31249 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC13.42□□□□□ -0.26
HOXD3P31249 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC13.42□□□□□ -0.26
HOXD3P31249 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
HOXD3P31249 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC13.42□□□□□ -0.26
HOXD3P31249 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC13.42□□□□□ -0.26
HOXD3P31249 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC13.42□□□□□ -0.26
HOXD3P31249 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
HOXD3P31249 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC13.42□□□□□ -0.26
HOXD3P31249 GNAS-203ENST00000306120 1878 ntBASIC13.42□□□□□ -0.26
HOXD3P31249 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC13.42□□□□□ -0.26
HOXD3P31249 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC13.42□□□□□ -0.26
HOXD3P31249 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC13.42□□□□□ -0.26
HOXD3P31249 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
HOXD3P31249 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
HOXD3P31249 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
HOXD3P31249 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
HOXD3P31249 AC009336.1-201ENST00000608941 1553 ntBASIC13.41□□□□□ -0.26
HOXD3P31249 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC13.41□□□□□ -0.26
HOXD3P31249 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
HOXD3P31249 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
HOXD3P31249 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
HOXD3P31249 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
HOXD3P31249 CHRNB2-201ENST00000368476 5867 ntAPPRIS P2 TSL 1 (best) BASIC13.41□□□□□ -0.26
HOXD3P31249 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC13.41□□□□□ -0.26
HOXD3P31249 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC13.41□□□□□ -0.26
HOXD3P31249 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
HOXD3P31249 RAVER2-202ENST00000371072 4362 ntAPPRIS P2 TSL 1 (best) BASIC13.41□□□□□ -0.26
HOXD3P31249 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC13.41□□□□□ -0.26
HOXD3P31249 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC13.41□□□□□ -0.26
HOXD3P31249 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
HOXD3P31249 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
HOXD3P31249 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
HOXD3P31249 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
HOXD3P31249 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
HOXD3P31249 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC13.41□□□□□ -0.26
HOXD3P31249 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC13.41□□□□□ -0.26
HOXD3P31249 GPX1P2-201ENST00000429271 606 ntBASIC13.41□□□□□ -0.26
HOXD3P31249 SIGLEC30P-201ENST00000455569 941 ntBASIC13.41□□□□□ -0.26
HOXD3P31249 RNA5SP416-201ENST00000516838 111 ntBASIC13.41□□□□□ -0.26
HOXD3P31249 DHDH-204ENST00000523250 634 ntTSL 5 BASIC13.41□□□□□ -0.26
HOXD3P31249 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC13.41□□□□□ -0.26
HOXD3P31249 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC13.41□□□□□ -0.26
HOXD3P31249 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC13.41□□□□□ -0.26
HOXD3P31249 COPE-211ENST00000600932 1144 ntTSL 5 BASIC13.41□□□□□ -0.26
HOXD3P31249 AC004817.3-201ENST00000602957 2129 ntBASIC13.41□□□□□ -0.26
HOXD3P31249 AL139424.1-201ENST00000607572 797 ntBASIC13.41□□□□□ -0.26
HOXD3P31249 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC13.41□□□□□ -0.26
HOXD3P31249 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC13.41□□□□□ -0.26
HOXD3P31249 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC13.41□□□□□ -0.26
Retrieved 100 of 98,524 protein–RNA pairs in 35.6 ms