Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 AC008567.3-202ENST00000619671 859 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
PTPN4P29074 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC17.44■□□□□ 0.38
PTPN4P29074 DUSP8-202ENST00000397374 4480 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
PTPN4P29074 HYAL3-201ENST00000336307 1942 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
PTPN4P29074 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC17.44■□□□□ 0.38
PTPN4P29074 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC17.44■□□□□ 0.38
PTPN4P29074 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
PTPN4P29074 CARNS1-201ENST00000307823 3942 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
PTPN4P29074 LETM2-205ENST00000519476 2240 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
PTPN4P29074 TTLL11-201ENST00000321582 3250 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
PTPN4P29074 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC17.44■□□□□ 0.38
PTPN4P29074 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
PTPN4P29074 CACNA1G-206ENST00000416767 4899 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
PTPN4P29074 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
PTPN4P29074 AGK-211ENST00000629555 2765 ntTSL 5 BASIC17.44■□□□□ 0.38
PTPN4P29074 MYH14-202ENST00000376970 6787 ntAPPRIS ALT2 TSL 5 BASIC17.44■□□□□ 0.38
PTPN4P29074 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
PTPN4P29074 AC099343.3-201ENST00000605834 2503 ntBASIC17.44■□□□□ 0.38
PTPN4P29074 CACNA1A-214ENST00000614285 8410 ntAPPRIS ALT2 TSL 5 BASIC17.44■□□□□ 0.38
PTPN4P29074 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
PTPN4P29074 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
PTPN4P29074 WASF1-207ENST00000392589 3220 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
PTPN4P29074 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC17.43■□□□□ 0.38
PTPN4P29074 HLA-J-201ENST00000462773 1622 ntBASIC17.43■□□□□ 0.38
PTPN4P29074 AC034236.2-201ENST00000606662 1610 ntBASIC17.43■□□□□ 0.38
PTPN4P29074 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC17.43■□□□□ 0.38
PTPN4P29074 HMBOX1-212ENST00000558662 1765 ntTSL 5 BASIC17.43■□□□□ 0.38
PTPN4P29074 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
PTPN4P29074 ASTN2-202ENST00000313400 4747 ntAPPRIS ALT2 TSL 5 BASIC17.43■□□□□ 0.38
PTPN4P29074 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
PTPN4P29074 ZNF213-206ENST00000574902 3208 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
PTPN4P29074 BCR-201ENST00000305877 7082 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
PTPN4P29074 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC17.43■□□□□ 0.38
PTPN4P29074 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
PTPN4P29074 LITAF-220ENST00000620789 692 ntTSL 5 BASIC17.43■□□□□ 0.38
PTPN4P29074 CNP-201ENST00000393888 2583 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
PTPN4P29074 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC17.43■□□□□ 0.38
PTPN4P29074 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC17.43■□□□□ 0.38
PTPN4P29074 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
PTPN4P29074 SYBU-209ENST00000446070 2919 ntAPPRIS P4 TSL 1 (best) BASIC17.43■□□□□ 0.38
PTPN4P29074 KRT18P1-202ENST00000452408 1331 ntBASIC17.43■□□□□ 0.38
PTPN4P29074 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
PTPN4P29074 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
PTPN4P29074 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
PTPN4P29074 SARDH-205ENST00000422262 2367 ntTSL 5 BASIC17.43■□□□□ 0.38
PTPN4P29074 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC17.43■□□□□ 0.38
PTPN4P29074 PIGQ-201ENST00000026218 2846 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
PTPN4P29074 BMI1-201ENST00000376663 3428 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
PTPN4P29074 ZBTB7C-221ENST00000590800 4947 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
PTPN4P29074 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC17.42■□□□□ 0.38
PTPN4P29074 MAPK14-201ENST00000229794 3779 ntAPPRIS P5 TSL 1 (best) BASIC17.42■□□□□ 0.38
PTPN4P29074 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC17.42■□□□□ 0.38
PTPN4P29074 FLJ31104-201ENST00000500093 2289 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
PTPN4P29074 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
PTPN4P29074 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC17.42■□□□□ 0.38
PTPN4P29074 AKR1A1-214ENST00000621846 1360 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
PTPN4P29074 TIGD2-202ENST00000603357 3217 ntAPPRIS P1 TSL 4 BASIC17.42■□□□□ 0.38
PTPN4P29074 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC17.42■□□□□ 0.38
PTPN4P29074 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
PTPN4P29074 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC17.42■□□□□ 0.38
PTPN4P29074 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC17.42■□□□□ 0.38
PTPN4P29074 PLPPR4-202ENST00000370185 5369 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
PTPN4P29074 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
PTPN4P29074 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
PTPN4P29074 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
PTPN4P29074 ING5-202ENST00000406941 946 ntAPPRIS ALT1 TSL 1 (best) BASIC17.42■□□□□ 0.38
PTPN4P29074 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC17.42■□□□□ 0.38
PTPN4P29074 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
PTPN4P29074 MIR3180-4-201ENST00000582223 153 ntBASIC17.42■□□□□ 0.38
PTPN4P29074 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC17.42■□□□□ 0.38
PTPN4P29074 KISS1R-203ENST00000606939 964 ntTSL 5 BASIC17.42■□□□□ 0.38
PTPN4P29074 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC17.42■□□□□ 0.38
PTPN4P29074 COBL-201ENST00000265136 5291 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
PTPN4P29074 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC17.42■□□□□ 0.38
PTPN4P29074 CYP4F22-202ENST00000601005 2445 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
PTPN4P29074 PI4KAP1-201ENST00000610959 2425 ntTSL 2 BASIC17.42■□□□□ 0.38
PTPN4P29074 PRR5-203ENST00000403581 2279 ntTSL 2 BASIC17.42■□□□□ 0.38
PTPN4P29074 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
PTPN4P29074 LINC01126-201ENST00000623515 1646 ntBASIC17.42■□□□□ 0.38
PTPN4P29074 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
PTPN4P29074 ZBTB5-201ENST00000307750 4627 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
PTPN4P29074 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
PTPN4P29074 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC17.42■□□□□ 0.38
PTPN4P29074 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
PTPN4P29074 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC17.42■□□□□ 0.38
PTPN4P29074 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
PTPN4P29074 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
PTPN4P29074 STK17A-201ENST00000319357 3368 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
PTPN4P29074 SOCS2-212ENST00000622746 2881 ntAPPRIS P1 TSL 3 BASIC17.42■□□□□ 0.38
PTPN4P29074 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
PTPN4P29074 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
PTPN4P29074 ARHGAP35-201ENST00000404338 8889 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
PTPN4P29074 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
PTPN4P29074 RHOBTB1-201ENST00000337910 4473 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
PTPN4P29074 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
PTPN4P29074 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
PTPN4P29074 AC091980.2-201ENST00000619056 2775 ntAPPRIS P1 BASIC17.41■□□□□ 0.38
PTPN4P29074 WNK2-201ENST00000297954 7138 ntAPPRIS P2 TSL 1 (best) BASIC17.41■□□□□ 0.38
PTPN4P29074 STK39-201ENST00000355999 3820 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
PTPN4P29074 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 28.1 ms