Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
VCANP13611 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
VCANP13611 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
VCANP13611 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC17.71■□□□□ 0.43
VCANP13611 FADS2-212ENST00000522639 360 ntTSL 5 BASIC17.71■□□□□ 0.43
VCANP13611 ALG1L8P-201ENST00000533887 760 ntBASIC17.71■□□□□ 0.43
VCANP13611 EMC4-209ENST00000559421 497 ntTSL 2 BASIC17.71■□□□□ 0.43
VCANP13611 FADS2-215ENST00000574708 385 ntTSL 3 BASIC17.71■□□□□ 0.43
VCANP13611 AC087289.5-201ENST00000586076 3175 ntBASIC17.71■□□□□ 0.43
VCANP13611 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
VCANP13611 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
VCANP13611 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.43
VCANP13611 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC17.71■□□□□ 0.43
VCANP13611 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
VCANP13611 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC17.71■□□□□ 0.43
VCANP13611 CIDEA-201ENST00000320477 828 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
VCANP13611 EDN2-201ENST00000372587 1241 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
VCANP13611 ITPA-201ENST00000380113 1185 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
VCANP13611 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
VCANP13611 CROCCP4-201ENST00000457096 498 ntBASIC17.71■□□□□ 0.43
VCANP13611 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC17.71■□□□□ 0.43
VCANP13611 SPECC1-223ENST00000584527 940 ntTSL 3 BASIC17.71■□□□□ 0.43
VCANP13611 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
VCANP13611 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
VCANP13611 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC17.71■□□□□ 0.43
VCANP13611 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.43
VCANP13611 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC17.71■□□□□ 0.43
VCANP13611 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
VCANP13611 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
VCANP13611 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
VCANP13611 DKKL1-201ENST00000221498 1222 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.43
VCANP13611 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
VCANP13611 FAM19A3-202ENST00000369630 1282 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
VCANP13611 SPDYE18-201ENST00000510091 1050 ntBASIC17.71■□□□□ 0.43
VCANP13611 BTBD7P1-201ENST00000447253 1453 ntBASIC17.71■□□□□ 0.42
VCANP13611 ABHD18-206ENST00000611882 1493 ntTSL 1 (best) BASIC17.71■□□□□ 0.42
VCANP13611 ORMDL1-203ENST00000392350 2009 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
VCANP13611 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
VCANP13611 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
VCANP13611 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
VCANP13611 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
VCANP13611 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC17.7■□□□□ 0.42
VCANP13611 AURKAIP1-201ENST00000321751 798 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
VCANP13611 MS4A13-201ENST00000378185 808 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
VCANP13611 RAB7A-204ENST00000483906 533 ntTSL 3 BASIC17.7■□□□□ 0.42
VCANP13611 CRYGN-205ENST00000491928 698 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
VCANP13611 ACYP1-206ENST00000555694 565 ntAPPRIS P1 TSL 3 BASIC17.7■□□□□ 0.42
VCANP13611 DMRT2-202ENST00000302441 1495 ntTSL 5 BASIC17.7■□□□□ 0.42
VCANP13611 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC17.7■□□□□ 0.42
VCANP13611 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
VCANP13611 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
VCANP13611 AC105202.1-204ENST00000502167 1781 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
VCANP13611 PTGES2-AS1-201ENST00000443493 2100 ntBASIC17.7■□□□□ 0.42
VCANP13611 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
VCANP13611 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
VCANP13611 AL139289.2-201ENST00000424948 661 ntTSL 2 BASIC17.7■□□□□ 0.42
VCANP13611 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC17.7■□□□□ 0.42
VCANP13611 MIR3615-201ENST00000581999 87 ntBASIC17.7■□□□□ 0.42
VCANP13611 BRINP1-202ENST00000373964 1641 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
VCANP13611 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC17.7■□□□□ 0.42
VCANP13611 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
VCANP13611 CMA1-201ENST00000206446 633 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
VCANP13611 KRTAP10-1-201ENST00000400375 1215 ntAPPRIS P1 BASIC17.7■□□□□ 0.42
VCANP13611 ZNF527-203ENST00000483919 1142 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
VCANP13611 IL32-212ENST00000526464 1198 ntAPPRIS P4 TSL 2 BASIC17.7■□□□□ 0.42
VCANP13611 IL32-217ENST00000530538 674 ntAPPRIS P4 TSL 3 BASIC17.7■□□□□ 0.42
VCANP13611 AC105129.2-201ENST00000559536 390 ntBASIC17.7■□□□□ 0.42
VCANP13611 AC010641.1-201ENST00000591757 529 ntTSL 3 BASIC17.7■□□□□ 0.42
VCANP13611 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
VCANP13611 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
VCANP13611 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
VCANP13611 NDUFA2-201ENST00000252102 804 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
VCANP13611 ING1-204ENST00000375775 1074 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
VCANP13611 HILPDA-202ENST00000435296 785 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
VCANP13611 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC17.69■□□□□ 0.42
VCANP13611 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC17.69■□□□□ 0.42
VCANP13611 ALKBH7-203ENST00000599849 556 ntTSL 3 BASIC17.69■□□□□ 0.42
VCANP13611 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC17.69■□□□□ 0.42
VCANP13611 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
VCANP13611 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC17.69■□□□□ 0.42
VCANP13611 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
VCANP13611 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
VCANP13611 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
VCANP13611 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
VCANP13611 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC17.69■□□□□ 0.42
VCANP13611 PHACTR1-202ENST00000379329 707 ntTSL 2 BASIC17.69■□□□□ 0.42
VCANP13611 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
VCANP13611 AC103564.2-201ENST00000432853 1299 ntBASIC17.69■□□□□ 0.42
VCANP13611 AL513480.1-201ENST00000451731 511 ntBASIC17.69■□□□□ 0.42
VCANP13611 IGHJ2P-201ENST00000454480 60 ntBASIC17.69■□□□□ 0.42
VCANP13611 SERF1A-205ENST00000507348 663 ntTSL 2 BASIC17.69■□□□□ 0.42
VCANP13611 ROPN1B-210ENST00000514116 1088 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
VCANP13611 TEX28P1-201ENST00000613479 1221 ntBASIC17.69■□□□□ 0.42
VCANP13611 TEX28P2-201ENST00000617764 1221 ntBASIC17.69■□□□□ 0.42
VCANP13611 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC17.69■□□□□ 0.42
VCANP13611 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
VCANP13611 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
VCANP13611 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
VCANP13611 C1orf159-201ENST00000379319 1097 ntAPPRIS P3 TSL 5 BASIC17.68■□□□□ 0.42
VCANP13611 HNRNPA3P1-201ENST00000401429 1139 ntBASIC17.68■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 55.2 ms