Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
COL6A3P12111 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
COL6A3P12111 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC17.81■□□□□ 0.44
COL6A3P12111 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
COL6A3P12111 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
COL6A3P12111 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC17.81■□□□□ 0.44
COL6A3P12111 UBXN1-202ENST00000301935 1153 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
COL6A3P12111 PHLDA2-201ENST00000314222 955 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
COL6A3P12111 PEA15-203ENST00000368077 1021 ntTSL 2 BASIC17.81■□□□□ 0.44
COL6A3P12111 SLC35B4-204ENST00000470969 1033 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
COL6A3P12111 AC025442.1-201ENST00000521596 481 ntTSL 2 BASIC17.81■□□□□ 0.44
COL6A3P12111 AC009041.1-201ENST00000565401 544 ntTSL 4 BASIC17.81■□□□□ 0.44
COL6A3P12111 C17orf62-239ENST00000585080 741 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
COL6A3P12111 UBXN1-218ENST00000616865 1002 ntTSL 5 BASIC17.81■□□□□ 0.44
COL6A3P12111 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
COL6A3P12111 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
COL6A3P12111 ME2-218ENST00000640965 2476 ntTSL 5 BASIC17.81■□□□□ 0.44
COL6A3P12111 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
COL6A3P12111 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
COL6A3P12111 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC17.81■□□□□ 0.44
COL6A3P12111 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
COL6A3P12111 CENPM-206ENST00000407253 818 ntTSL 2 BASIC17.81■□□□□ 0.44
COL6A3P12111 STAG3L5P-205ENST00000473757 1255 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
COL6A3P12111 TROAP-207ENST00000548311 623 ntAPPRIS ALT2 TSL 2 BASIC17.81■□□□□ 0.44
COL6A3P12111 AC010491.1-202ENST00000567048 528 ntTSL 2 BASIC17.81■□□□□ 0.44
COL6A3P12111 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC17.81■□□□□ 0.44
COL6A3P12111 CREB3L2-208ENST00000620715 1053 ntTSL 5 BASIC17.81■□□□□ 0.44
COL6A3P12111 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
COL6A3P12111 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC17.8■□□□□ 0.44
COL6A3P12111 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
COL6A3P12111 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
COL6A3P12111 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
COL6A3P12111 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
COL6A3P12111 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
COL6A3P12111 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
COL6A3P12111 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
COL6A3P12111 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
COL6A3P12111 COBL-210ENST00000632460 1941 ntTSL 5 BASIC17.8■□□□□ 0.44
COL6A3P12111 POLR2L-201ENST00000322028 892 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
COL6A3P12111 PSMB9-208ENST00000395330 792 ntTSL 3 BASIC17.8■□□□□ 0.44
COL6A3P12111 SAP30L-202ENST00000426761 777 ntTSL 3 BASIC17.8■□□□□ 0.44
COL6A3P12111 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC17.8■□□□□ 0.44
COL6A3P12111 HCG18-245ENST00000602550 559 ntTSL 4 BASIC17.8■□□□□ 0.44
COL6A3P12111 MIR7845-201ENST00000618396 99 ntBASIC17.8■□□□□ 0.44
COL6A3P12111 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC17.8■□□□□ 0.44
COL6A3P12111 LINC00221-202ENST00000619530 1499 ntTSL 2 BASIC17.8■□□□□ 0.44
COL6A3P12111 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
COL6A3P12111 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
COL6A3P12111 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
COL6A3P12111 LINC01759-201ENST00000412639 985 ntTSL 3 BASIC17.8■□□□□ 0.44
COL6A3P12111 NUS1P3-201ENST00000423502 862 ntBASIC17.8■□□□□ 0.44
COL6A3P12111 TMEM198B-204ENST00000484016 896 ntBASIC17.8■□□□□ 0.44
COL6A3P12111 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC17.8■□□□□ 0.44
COL6A3P12111 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
COL6A3P12111 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
COL6A3P12111 PQBP1-201ENST00000218224 1113 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
COL6A3P12111 PQBP1-202ENST00000247140 664 ntTSL 3 BASIC17.79■□□□□ 0.44
COL6A3P12111 C1orf123-201ENST00000294360 1085 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
COL6A3P12111 CCDC84-201ENST00000334418 1202 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
COL6A3P12111 PQBP1-203ENST00000376563 1056 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
COL6A3P12111 PQBP1-204ENST00000376566 760 ntTSL 3 BASIC17.79■□□□□ 0.44
COL6A3P12111 PQBP1-205ENST00000396763 965 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
COL6A3P12111 AL080243.2-201ENST00000418783 582 ntBASIC17.79■□□□□ 0.44
COL6A3P12111 ZSCAN32-204ENST00000422427 1267 ntTSL 2 BASIC17.79■□□□□ 0.44
COL6A3P12111 AC060234.1-201ENST00000422966 474 ntTSL 3 BASIC17.79■□□□□ 0.44
COL6A3P12111 PQBP1-207ENST00000447146 1020 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
COL6A3P12111 GTF2H2C-215ENST00000514162 610 ntTSL 5 BASIC17.79■□□□□ 0.44
COL6A3P12111 MCPH1-AS1-203ENST00000525186 869 ntTSL 3 BASIC17.79■□□□□ 0.44
COL6A3P12111 LINC02279-201ENST00000553435 737 ntTSL 5 BASIC17.79■□□□□ 0.44
COL6A3P12111 AC025810.1-201ENST00000569986 981 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
COL6A3P12111 AC004477.1-202ENST00000584428 539 ntTSL 2 BASIC17.79■□□□□ 0.44
COL6A3P12111 AC010319.3-201ENST00000597028 470 ntBASIC17.79■□□□□ 0.44
COL6A3P12111 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC17.79■□□□□ 0.44
COL6A3P12111 AC006504.5-203ENST00000590628 1335 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
COL6A3P12111 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
COL6A3P12111 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
COL6A3P12111 AC114730.3-201ENST00000435195 584 ntTSL 5 BASIC17.79■□□□□ 0.44
COL6A3P12111 LEF1-AS1-204ENST00000508266 559 ntTSL 4 BASIC17.79■□□□□ 0.44
COL6A3P12111 DOC2GP-202ENST00000514950 1163 ntBASIC17.79■□□□□ 0.44
COL6A3P12111 LINC01887-202ENST00000584734 860 ntTSL 3 BASIC17.79■□□□□ 0.44
COL6A3P12111 AC027307.2-201ENST00000591252 911 ntBASIC17.79■□□□□ 0.44
COL6A3P12111 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
COL6A3P12111 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC17.79■□□□□ 0.44
COL6A3P12111 GABARAPL3-202ENST00000624044 1851 ntBASIC17.79■□□□□ 0.44
COL6A3P12111 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC17.79■□□□□ 0.44
COL6A3P12111 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC17.79■□□□□ 0.44
COL6A3P12111 LCE1A-201ENST00000335123 422 ntAPPRIS P1 BASIC17.79■□□□□ 0.44
COL6A3P12111 AC006033.1-201ENST00000440505 426 ntBASIC17.79■□□□□ 0.44
COL6A3P12111 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC17.79■□□□□ 0.44
COL6A3P12111 AL138918.1-201ENST00000568306 659 ntBASIC17.79■□□□□ 0.44
COL6A3P12111 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC17.78■□□□□ 0.44
COL6A3P12111 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC17.78■□□□□ 0.44
COL6A3P12111 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
COL6A3P12111 MIR33B-201ENST00000385104 96 ntBASIC17.78■□□□□ 0.44
COL6A3P12111 FBLN7-204ENST00000409667 1124 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
COL6A3P12111 AC103563.7-201ENST00000448734 478 ntTSL 3 BASIC17.78■□□□□ 0.44
COL6A3P12111 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC17.78■□□□□ 0.44
COL6A3P12111 AC006064.3-201ENST00000537921 477 ntTSL 4 BASIC17.78■□□□□ 0.44
COL6A3P12111 TAMM41-212ENST00000630288 607 ntTSL 2 BASIC17.78■□□□□ 0.44
COL6A3P12111 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC17.78■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 40.9 ms