Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 AL513480.1-201ENST00000451731 511 ntBASIC16.8■□□□□ 0.28
HOXC4P09017 AC004967.1-201ENST00000453589 447 ntBASIC16.8■□□□□ 0.28
HOXC4P09017 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
HOXC4P09017 MMP17-203ENST00000535004 719 ntTSL 3 BASIC16.8■□□□□ 0.28
HOXC4P09017 AL390334.1-205ENST00000555797 411 ntTSL 3 BASIC16.8■□□□□ 0.28
HOXC4P09017 RPL28-209ENST00000560055 670 ntTSL 3 BASIC16.8■□□□□ 0.28
HOXC4P09017 AC005412.3-201ENST00000580309 715 ntBASIC16.8■□□□□ 0.28
HOXC4P09017 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC16.8■□□□□ 0.28
HOXC4P09017 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC16.8■□□□□ 0.28
HOXC4P09017 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
HOXC4P09017 BSG-214ENST00000614867 960 ntTSL 3 BASIC16.8■□□□□ 0.28
HOXC4P09017 AL691403.2-201ENST00000618460 490 ntBASIC16.8■□□□□ 0.28
HOXC4P09017 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC16.8■□□□□ 0.28
HOXC4P09017 MCCC2-209ENST00000629193 1128 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
HOXC4P09017 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
HOXC4P09017 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
HOXC4P09017 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
HOXC4P09017 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC16.8■□□□□ 0.28
HOXC4P09017 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC16.8■□□□□ 0.28
HOXC4P09017 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC16.8■□□□□ 0.28
HOXC4P09017 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC16.8■□□□□ 0.28
HOXC4P09017 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
HOXC4P09017 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
HOXC4P09017 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
HOXC4P09017 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
HOXC4P09017 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
HOXC4P09017 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
HOXC4P09017 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
HOXC4P09017 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
HOXC4P09017 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC16.79■□□□□ 0.28
HOXC4P09017 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
HOXC4P09017 CD276-203ENST00000537340 2439 ntTSL 2 BASIC16.79■□□□□ 0.28
HOXC4P09017 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
HOXC4P09017 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC16.79■□□□□ 0.28
HOXC4P09017 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC16.79■□□□□ 0.28
HOXC4P09017 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
HOXC4P09017 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
HOXC4P09017 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
HOXC4P09017 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC16.79■□□□□ 0.28
HOXC4P09017 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
HOXC4P09017 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
HOXC4P09017 DDT-204ENST00000404092 805 ntTSL 3 BASIC16.79■□□□□ 0.28
HOXC4P09017 AP006288.1-201ENST00000446065 395 ntBASIC16.79■□□□□ 0.28
HOXC4P09017 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC16.79■□□□□ 0.28
HOXC4P09017 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC16.79■□□□□ 0.28
HOXC4P09017 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC16.79■□□□□ 0.28
HOXC4P09017 AC010624.2-201ENST00000600998 575 ntTSL 5 BASIC16.79■□□□□ 0.28
HOXC4P09017 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC16.79■□□□□ 0.28
HOXC4P09017 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
HOXC4P09017 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC16.79■□□□□ 0.28
HOXC4P09017 IRS2-201ENST00000375856 8138 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
HOXC4P09017 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
HOXC4P09017 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
HOXC4P09017 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC16.79■□□□□ 0.28
HOXC4P09017 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
HOXC4P09017 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
HOXC4P09017 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC16.79■□□□□ 0.28
HOXC4P09017 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC16.79■□□□□ 0.28
HOXC4P09017 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC16.79■□□□□ 0.28
HOXC4P09017 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC16.79■□□□□ 0.28
HOXC4P09017 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
HOXC4P09017 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
HOXC4P09017 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
HOXC4P09017 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC16.78■□□□□ 0.28
HOXC4P09017 BCL2-203ENST00000589955 5011 ntBASIC16.78■□□□□ 0.28
HOXC4P09017 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC16.78■□□□□ 0.28
HOXC4P09017 GCGR-201ENST00000400723 2051 ntAPPRIS P2 TSL 1 (best) BASIC16.78■□□□□ 0.28
HOXC4P09017 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
HOXC4P09017 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC16.78■□□□□ 0.28
HOXC4P09017 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC16.78■□□□□ 0.28
HOXC4P09017 PARK7-203ENST00000377491 977 ntAPPRIS P1 TSL 3 BASIC16.78■□□□□ 0.28
HOXC4P09017 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC16.78■□□□□ 0.28
HOXC4P09017 AC211486.1-202ENST00000416371 468 ntBASIC16.78■□□□□ 0.28
HOXC4P09017 FALEC-201ENST00000416894 566 ntTSL 3 BASIC16.78■□□□□ 0.28
HOXC4P09017 AC211476.1-201ENST00000503899 468 ntBASIC16.78■□□□□ 0.28
HOXC4P09017 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC16.78■□□□□ 0.28
HOXC4P09017 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC16.78■□□□□ 0.28
HOXC4P09017 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC16.78■□□□□ 0.28
HOXC4P09017 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC16.78■□□□□ 0.28
HOXC4P09017 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC16.78■□□□□ 0.28
HOXC4P09017 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC16.78■□□□□ 0.28
HOXC4P09017 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC16.78■□□□□ 0.28
HOXC4P09017 MIR4515-201ENST00000584082 81 ntBASIC16.78■□□□□ 0.28
HOXC4P09017 AC068137.2-201ENST00000605408 478 ntBASIC16.78■□□□□ 0.28
HOXC4P09017 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC16.78■□□□□ 0.28
HOXC4P09017 AC134684.3-201ENST00000641758 218 ntBASIC16.78■□□□□ 0.28
HOXC4P09017 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
HOXC4P09017 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC16.78■□□□□ 0.28
HOXC4P09017 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC16.78■□□□□ 0.28
HOXC4P09017 ELL2P1-201ENST00000413990 1906 ntBASIC16.78■□□□□ 0.28
HOXC4P09017 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
HOXC4P09017 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC16.78■□□□□ 0.28
HOXC4P09017 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC16.78■□□□□ 0.28
HOXC4P09017 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
HOXC4P09017 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
HOXC4P09017 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC16.77■□□□□ 0.28
HOXC4P09017 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.28
HOXC4P09017 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
HOXC4P09017 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC16.77■□□□□ 0.28
HOXC4P09017 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 28.1 ms