Protein–RNA interactions for Protein: O95243

MBD4, Methyl-CpG-binding domain protein 4, humanhuman

Predictions only

Length 580 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MBD4O95243 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC20.63■□□□□ 0.89
MBD4O95243 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
MBD4O95243 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC20.63■□□□□ 0.89
MBD4O95243 CRCP-205ENST00000431089 942 ntTSL 2 BASIC20.63■□□□□ 0.89
MBD4O95243 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC20.63■□□□□ 0.89
MBD4O95243 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC20.63■□□□□ 0.89
MBD4O95243 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC20.63■□□□□ 0.89
MBD4O95243 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC20.63■□□□□ 0.89
MBD4O95243 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
MBD4O95243 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC20.63■□□□□ 0.89
MBD4O95243 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC20.63■□□□□ 0.89
MBD4O95243 FZD10-202ENST00000539839 3282 ntBASIC20.63■□□□□ 0.89
MBD4O95243 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
MBD4O95243 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC20.63■□□□□ 0.89
MBD4O95243 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
MBD4O95243 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
MBD4O95243 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
MBD4O95243 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC20.63■□□□□ 0.89
MBD4O95243 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
MBD4O95243 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
MBD4O95243 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC20.63■□□□□ 0.89
MBD4O95243 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
MBD4O95243 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
MBD4O95243 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC20.63■□□□□ 0.89
MBD4O95243 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC20.63■□□□□ 0.89
MBD4O95243 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
MBD4O95243 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
MBD4O95243 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
MBD4O95243 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
MBD4O95243 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
MBD4O95243 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
MBD4O95243 KLK6-202ENST00000376851 1708 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
MBD4O95243 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
MBD4O95243 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC20.62■□□□□ 0.89
MBD4O95243 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC20.62■□□□□ 0.89
MBD4O95243 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC20.62■□□□□ 0.89
MBD4O95243 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC20.62■□□□□ 0.89
MBD4O95243 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
MBD4O95243 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
MBD4O95243 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC20.62■□□□□ 0.89
MBD4O95243 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC20.62■□□□□ 0.89
MBD4O95243 CAND2-206ENST00000626378 333 ntTSL 5 BASIC20.62■□□□□ 0.89
MBD4O95243 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
MBD4O95243 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC20.62■□□□□ 0.89
MBD4O95243 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
MBD4O95243 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC20.62■□□□□ 0.89
MBD4O95243 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC20.62■□□□□ 0.89
MBD4O95243 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC20.62■□□□□ 0.89
MBD4O95243 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
MBD4O95243 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
MBD4O95243 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
MBD4O95243 AC016396.2-201ENST00000562575 1417 ntBASIC20.61■□□□□ 0.89
MBD4O95243 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC20.61■□□□□ 0.89
MBD4O95243 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC20.61■□□□□ 0.89
MBD4O95243 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC20.61■□□□□ 0.89
MBD4O95243 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
MBD4O95243 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC20.61■□□□□ 0.89
MBD4O95243 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC20.61■□□□□ 0.89
MBD4O95243 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC20.61■□□□□ 0.89
MBD4O95243 HS6ST1P1-201ENST00000481504 1234 ntBASIC20.61■□□□□ 0.89
MBD4O95243 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC20.61■□□□□ 0.89
MBD4O95243 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC20.61■□□□□ 0.89
MBD4O95243 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC20.61■□□□□ 0.89
MBD4O95243 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC20.61■□□□□ 0.89
MBD4O95243 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC20.61■□□□□ 0.89
MBD4O95243 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
MBD4O95243 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
MBD4O95243 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
MBD4O95243 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
MBD4O95243 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC20.61■□□□□ 0.89
MBD4O95243 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
MBD4O95243 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
MBD4O95243 AC005332.8-201ENST00000622750 2735 ntBASIC20.61■□□□□ 0.89
MBD4O95243 PLEKHG5-206ENST00000377748 5221 ntAPPRIS ALT2 TSL 2 BASIC20.61■□□□□ 0.89
MBD4O95243 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
MBD4O95243 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC20.6■□□□□ 0.89
MBD4O95243 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC20.6■□□□□ 0.89
MBD4O95243 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
MBD4O95243 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC20.6■□□□□ 0.89
MBD4O95243 OR7E47P-204ENST00000575924 449 ntBASIC20.6■□□□□ 0.89
MBD4O95243 TCAP-202ENST00000578283 583 ntTSL 5 BASIC20.6■□□□□ 0.89
MBD4O95243 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
MBD4O95243 AC064836.3-201ENST00000607928 673 ntBASIC20.6■□□□□ 0.89
MBD4O95243 FAM197Y3-203ENST00000618346 717 ntBASIC20.6■□□□□ 0.89
MBD4O95243 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
MBD4O95243 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
MBD4O95243 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
MBD4O95243 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
MBD4O95243 C2orf81-202ENST00000612891 1902 ntAPPRIS ALT2 TSL 5 BASIC20.6■□□□□ 0.89
MBD4O95243 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
MBD4O95243 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC20.6■□□□□ 0.89
MBD4O95243 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC20.6■□□□□ 0.89
MBD4O95243 AZIN1-201ENST00000337198 4721 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
MBD4O95243 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
MBD4O95243 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
MBD4O95243 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC20.59■□□□□ 0.89
MBD4O95243 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
MBD4O95243 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
MBD4O95243 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC20.59■□□□□ 0.89
MBD4O95243 TLE3-214ENST00000558939 6004 ntAPPRIS P4 TSL 1 (best) BASIC20.59■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 30.1 ms