Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
SEMA3DO95025 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC16.63■□□□□ 0.25
SEMA3DO95025 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
SEMA3DO95025 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
SEMA3DO95025 RCN1P2-201ENST00000398357 915 ntBASIC16.63■□□□□ 0.25
SEMA3DO95025 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC16.63■□□□□ 0.25
SEMA3DO95025 KLF4P1-201ENST00000412782 1185 ntBASIC16.63■□□□□ 0.25
SEMA3DO95025 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC16.63■□□□□ 0.25
SEMA3DO95025 AC069368.1-202ENST00000437723 750 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
SEMA3DO95025 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC16.63■□□□□ 0.25
SEMA3DO95025 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC16.63■□□□□ 0.25
SEMA3DO95025 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC16.63■□□□□ 0.25
SEMA3DO95025 BET1L-206ENST00000486280 665 ntTSL 3 BASIC16.63■□□□□ 0.25
SEMA3DO95025 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC16.63■□□□□ 0.25
SEMA3DO95025 CCNC-219ENST00000627680 896 ntTSL 5 BASIC16.63■□□□□ 0.25
SEMA3DO95025 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
SEMA3DO95025 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC16.63■□□□□ 0.25
SEMA3DO95025 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
SEMA3DO95025 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC16.63■□□□□ 0.25
SEMA3DO95025 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
SEMA3DO95025 ZBTB7C-221ENST00000590800 4947 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
SEMA3DO95025 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC16.63■□□□□ 0.25
SEMA3DO95025 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
SEMA3DO95025 AC132938.5-201ENST00000624980 1813 ntBASIC16.63■□□□□ 0.25
SEMA3DO95025 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
SEMA3DO95025 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC16.63■□□□□ 0.25
SEMA3DO95025 ATP6V0E2-202ENST00000425642 1649 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
SEMA3DO95025 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
SEMA3DO95025 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
SEMA3DO95025 EVPL-202ENST00000586740 6223 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
SEMA3DO95025 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC16.62■□□□□ 0.25
SEMA3DO95025 MAP7-209ENST00000618822 4497 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
SEMA3DO95025 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC16.62■□□□□ 0.25
SEMA3DO95025 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
SEMA3DO95025 AP001094.4-201ENST00000579008 2176 ntBASIC16.62■□□□□ 0.25
SEMA3DO95025 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC16.62■□□□□ 0.25
SEMA3DO95025 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
SEMA3DO95025 C4orf50-202ENST00000531445 6860 ntAPPRIS P5 TSL 5 BASIC16.62■□□□□ 0.25
SEMA3DO95025 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC16.62■□□□□ 0.25
SEMA3DO95025 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC16.62■□□□□ 0.25
SEMA3DO95025 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
SEMA3DO95025 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
SEMA3DO95025 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
SEMA3DO95025 CCNI2-204ENST00000614847 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
SEMA3DO95025 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SEMA3DO95025 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
SEMA3DO95025 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
SEMA3DO95025 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SEMA3DO95025 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC16.62■□□□□ 0.25
SEMA3DO95025 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC16.62■□□□□ 0.25
SEMA3DO95025 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SEMA3DO95025 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
SEMA3DO95025 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC16.62■□□□□ 0.25
SEMA3DO95025 SRP19-202ENST00000445150 833 ntTSL 2 BASIC16.62■□□□□ 0.25
SEMA3DO95025 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SEMA3DO95025 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC16.62■□□□□ 0.25
SEMA3DO95025 STK19B-204ENST00000512515 211 ntBASIC16.62■□□□□ 0.25
SEMA3DO95025 KRTCAP3-207ENST00000543753 956 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
SEMA3DO95025 COX5A-204ENST00000567270 579 ntTSL 3 BASIC16.62■□□□□ 0.25
SEMA3DO95025 AC132938.3-201ENST00000579095 357 ntTSL 2 BASIC16.62■□□□□ 0.25
SEMA3DO95025 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
SEMA3DO95025 AC008567.3-202ENST00000619671 859 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
SEMA3DO95025 AC073592.5-201ENST00000624854 528 ntBASIC16.62■□□□□ 0.25
SEMA3DO95025 ANKRD24-202ENST00000318934 3906 ntAPPRIS P2 TSL 5 BASIC16.62■□□□□ 0.25
SEMA3DO95025 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SEMA3DO95025 OPRK1-205ENST00000612786 5196 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
SEMA3DO95025 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC16.62■□□□□ 0.25
SEMA3DO95025 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SEMA3DO95025 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC16.62■□□□□ 0.25
SEMA3DO95025 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC16.62■□□□□ 0.25
SEMA3DO95025 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
SEMA3DO95025 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SEMA3DO95025 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
SEMA3DO95025 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
SEMA3DO95025 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
SEMA3DO95025 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
SEMA3DO95025 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
SEMA3DO95025 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
SEMA3DO95025 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
SEMA3DO95025 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC16.61■□□□□ 0.25
SEMA3DO95025 SEMA7A-201ENST00000261918 3885 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
SEMA3DO95025 LZTS3-202ENST00000337576 4238 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
SEMA3DO95025 WNT2-201ENST00000265441 2907 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
SEMA3DO95025 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
SEMA3DO95025 PMPCAP1-201ENST00000508114 1576 ntBASIC16.61■□□□□ 0.25
SEMA3DO95025 GDF6-201ENST00000287020 3701 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
SEMA3DO95025 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
SEMA3DO95025 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
SEMA3DO95025 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
SEMA3DO95025 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC16.61■□□□□ 0.25
SEMA3DO95025 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC16.61■□□□□ 0.25
SEMA3DO95025 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC16.61■□□□□ 0.25
SEMA3DO95025 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
SEMA3DO95025 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC16.61■□□□□ 0.25
SEMA3DO95025 AC099336.1-202ENST00000602961 463 ntBASIC16.61■□□□□ 0.25
SEMA3DO95025 AC093458.2-201ENST00000623150 629 ntBASIC16.61■□□□□ 0.25
SEMA3DO95025 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
SEMA3DO95025 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
SEMA3DO95025 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
SEMA3DO95025 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 29.5 ms