Protein–RNA interactions for Protein: O75150

RNF40, E3 ubiquitin-protein ligase BRE1B, humanhuman

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40O75150 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC18.76■□□□□ 0.59
RNF40O75150 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
RNF40O75150 DCAF17-211ENST00000539783 5623 ntAPPRIS ALT2 TSL 5 BASIC18.76■□□□□ 0.59
RNF40O75150 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
RNF40O75150 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
RNF40O75150 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
RNF40O75150 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
RNF40O75150 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC18.76■□□□□ 0.59
RNF40O75150 IGHV3-47-201ENST00000425060 335 ntBASIC18.76■□□□□ 0.59
RNF40O75150 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
RNF40O75150 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC18.76■□□□□ 0.59
RNF40O75150 GUCY1A2-202ENST00000347596 2532 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
RNF40O75150 RUNX2-201ENST00000359524 5390 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
RNF40O75150 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
RNF40O75150 MYH14-203ENST00000425460 6811 ntAPPRIS P3 TSL 5 BASIC18.76■□□□□ 0.59
RNF40O75150 FAM129B-201ENST00000373312 3957 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
RNF40O75150 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
RNF40O75150 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
RNF40O75150 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
RNF40O75150 SMCHD1-201ENST00000320876 8821 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
RNF40O75150 AL596257.1-201ENST00000641463 2694 ntBASIC18.76■□□□□ 0.59
RNF40O75150 PCGF3-201ENST00000362003 5685 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
RNF40O75150 ZNF514-202ENST00000411425 2755 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
RNF40O75150 PTGDR2-201ENST00000332539 2895 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
RNF40O75150 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC18.75■□□□□ 0.59
RNF40O75150 NFATC4-211ENST00000554344 2955 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
RNF40O75150 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
RNF40O75150 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
RNF40O75150 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
RNF40O75150 SARS2-201ENST00000221431 2057 ntAPPRIS P2 TSL 1 (best) BASIC18.75■□□□□ 0.59
RNF40O75150 MEX3C-204ENST00000616921 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
RNF40O75150 HHIPL1-201ENST00000330710 7390 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
RNF40O75150 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
RNF40O75150 PCDHA14-201ENST00000506751 2298 ntBASIC18.75■□□□□ 0.59
RNF40O75150 FAM111A-204ENST00000528737 6189 ntAPPRIS P1 TSL 2 BASIC18.75■□□□□ 0.59
RNF40O75150 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
RNF40O75150 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC18.75■□□□□ 0.59
RNF40O75150 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC18.75■□□□□ 0.59
RNF40O75150 KDM5C-204ENST00000375401 6031 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
RNF40O75150 IPMK-201ENST00000373935 6133 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
RNF40O75150 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
RNF40O75150 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC18.75■□□□□ 0.59
RNF40O75150 SOCS2-212ENST00000622746 2881 ntAPPRIS P1 TSL 3 BASIC18.75■□□□□ 0.59
RNF40O75150 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
RNF40O75150 ART5-201ENST00000359918 1241 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
RNF40O75150 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
RNF40O75150 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
RNF40O75150 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
RNF40O75150 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
RNF40O75150 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC18.75■□□□□ 0.59
RNF40O75150 MRPL3P1-201ENST00000400109 1033 ntBASIC18.75■□□□□ 0.59
RNF40O75150 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
RNF40O75150 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
RNF40O75150 AL662844.1-201ENST00000546340 181 ntBASIC18.75■□□□□ 0.59
RNF40O75150 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
RNF40O75150 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC18.75■□□□□ 0.59
RNF40O75150 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC18.75■□□□□ 0.59
RNF40O75150 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC18.75■□□□□ 0.59
RNF40O75150 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
RNF40O75150 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC18.75■□□□□ 0.59
RNF40O75150 MYLKP1-201ENST00000509077 1580 ntBASIC18.75■□□□□ 0.59
RNF40O75150 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
RNF40O75150 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
RNF40O75150 ZFP3-201ENST00000318833 5206 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
RNF40O75150 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC18.75■□□□□ 0.59
RNF40O75150 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
RNF40O75150 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC18.75■□□□□ 0.59
RNF40O75150 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
RNF40O75150 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC18.75■□□□□ 0.59
RNF40O75150 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
RNF40O75150 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
RNF40O75150 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC18.75■□□□□ 0.59
RNF40O75150 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC18.74■□□□□ 0.59
RNF40O75150 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC18.74■□□□□ 0.59
RNF40O75150 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
RNF40O75150 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC18.74■□□□□ 0.59
RNF40O75150 DGKZ-201ENST00000318201 3213 ntTSL 2 BASIC18.74■□□□□ 0.59
RNF40O75150 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC18.74■□□□□ 0.59
RNF40O75150 CROCCP2-202ENST00000412962 2773 ntBASIC18.74■□□□□ 0.59
RNF40O75150 C7orf31-201ENST00000283905 2673 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
RNF40O75150 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
RNF40O75150 NID1-202ENST00000366595 5412 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
RNF40O75150 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
RNF40O75150 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC18.74■□□□□ 0.59
RNF40O75150 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
RNF40O75150 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
RNF40O75150 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC18.74■□□□□ 0.59
RNF40O75150 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC18.74■□□□□ 0.59
RNF40O75150 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
RNF40O75150 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC18.74■□□□□ 0.59
RNF40O75150 AC007834.1-201ENST00000446473 728 ntTSL 3 BASIC18.74■□□□□ 0.59
RNF40O75150 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC18.74■□□□□ 0.59
RNF40O75150 RN7SL606P-201ENST00000472779 293 ntBASIC18.74■□□□□ 0.59
RNF40O75150 BET1L-206ENST00000486280 665 ntTSL 3 BASIC18.74■□□□□ 0.59
RNF40O75150 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC18.74■□□□□ 0.59
RNF40O75150 PPOX-214ENST00000535223 664 ntTSL 3 BASIC18.74■□□□□ 0.59
RNF40O75150 FICD-205ENST00000552758 603 ntTSL 2 BASIC18.74■□□□□ 0.59
RNF40O75150 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC18.74■□□□□ 0.59
RNF40O75150 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC18.74■□□□□ 0.59
RNF40O75150 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC18.74■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 29.3 ms