Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 CLDN5-201ENST00000403084 2357 ntBASIC13.26□□□□□ -0.29
COL6A5A8TX70 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC13.26□□□□□ -0.29
COL6A5A8TX70 BUD31-201ENST00000222969 1035 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
COL6A5A8TX70 CFLAR-203ENST00000341222 1283 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
COL6A5A8TX70 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
COL6A5A8TX70 AL353597.1-201ENST00000414875 998 ntTSL 5 BASIC13.26□□□□□ -0.29
COL6A5A8TX70 AL606534.2-205ENST00000437691 346 ntTSL 5 BASIC13.26□□□□□ -0.29
COL6A5A8TX70 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC13.26□□□□□ -0.29
COL6A5A8TX70 APOPT1-207ENST00000477116 906 ntTSL 3 BASIC13.26□□□□□ -0.29
COL6A5A8TX70 C8orf46-205ENST00000480005 865 ntTSL 2 BASIC13.26□□□□□ -0.29
COL6A5A8TX70 AC000032.1-201ENST00000562538 491 ntTSL 2 BASIC13.26□□□□□ -0.29
COL6A5A8TX70 HCG18-245ENST00000602550 559 ntTSL 4 BASIC13.26□□□□□ -0.29
COL6A5A8TX70 NDUFB1-207ENST00000617122 417 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
COL6A5A8TX70 AC093484.2-201ENST00000580996 2166 ntBASIC13.26□□□□□ -0.29
COL6A5A8TX70 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC13.26□□□□□ -0.29
COL6A5A8TX70 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC13.26□□□□□ -0.29
COL6A5A8TX70 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
COL6A5A8TX70 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC13.26□□□□□ -0.29
COL6A5A8TX70 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
COL6A5A8TX70 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
COL6A5A8TX70 PDE6D-201ENST00000287600 1175 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
COL6A5A8TX70 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
COL6A5A8TX70 SLC25A26-201ENST00000336733 1023 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
COL6A5A8TX70 PRKN-201ENST00000338468 1276 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
COL6A5A8TX70 SPAG11B-203ENST00000359758 612 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
COL6A5A8TX70 PRKN-203ENST00000366894 1157 ntTSL 5 BASIC13.26□□□□□ -0.29
COL6A5A8TX70 PHACTR1-202ENST00000379329 707 ntTSL 2 BASIC13.26□□□□□ -0.29
COL6A5A8TX70 TMEM176B-202ENST00000429904 1206 ntAPPRIS P1 TSL 2 BASIC13.26□□□□□ -0.29
COL6A5A8TX70 LINC01784-201ENST00000438401 378 ntTSL 2 BASIC13.26□□□□□ -0.29
COL6A5A8TX70 MPRIPP1-201ENST00000452433 1089 ntBASIC13.26□□□□□ -0.29
COL6A5A8TX70 AC013451.1-201ENST00000554552 518 ntTSL 4 BASIC13.26□□□□□ -0.29
COL6A5A8TX70 LINC02205-201ENST00000559752 239 ntTSL 5 BASIC13.26□□□□□ -0.29
COL6A5A8TX70 AC079328.1-201ENST00000560358 952 ntBASIC13.26□□□□□ -0.29
COL6A5A8TX70 AC010491.1-202ENST00000567048 528 ntTSL 2 BASIC13.26□□□□□ -0.29
COL6A5A8TX70 MIR4706-201ENST00000582134 82 ntBASIC13.26□□□□□ -0.29
COL6A5A8TX70 AC018665.1-201ENST00000622927 1362 ntBASIC13.26□□□□□ -0.29
COL6A5A8TX70 LINC00221-202ENST00000619530 1499 ntTSL 2 BASIC13.25□□□□□ -0.29
COL6A5A8TX70 ACOT7-204ENST00000377855 1614 ntAPPRIS P4 TSL 1 (best) BASIC13.25□□□□□ -0.29
COL6A5A8TX70 LINC01185-202ENST00000452343 1705 ntTSL 2 BASIC13.25□□□□□ -0.29
COL6A5A8TX70 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC13.25□□□□□ -0.29
COL6A5A8TX70 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC13.25□□□□□ -0.29
COL6A5A8TX70 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC13.25□□□□□ -0.29
COL6A5A8TX70 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
COL6A5A8TX70 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC13.25□□□□□ -0.29
COL6A5A8TX70 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
COL6A5A8TX70 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
COL6A5A8TX70 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
COL6A5A8TX70 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
COL6A5A8TX70 RAB29-201ENST00000235932 1723 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
COL6A5A8TX70 PC-208ENST00000529047 1607 ntTSL 3 BASIC13.25□□□□□ -0.29
COL6A5A8TX70 AKR7L-202ENST00000429712 1313 ntAPPRIS P5 TSL 1 (best) BASIC13.25□□□□□ -0.29
COL6A5A8TX70 EMC4-201ENST00000249209 852 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
COL6A5A8TX70 CENPM-206ENST00000407253 818 ntTSL 2 BASIC13.25□□□□□ -0.29
COL6A5A8TX70 AL139289.2-201ENST00000424948 661 ntTSL 2 BASIC13.25□□□□□ -0.29
COL6A5A8TX70 IP6K1-203ENST00000460540 1260 ntTSL 2 BASIC13.25□□□□□ -0.29
COL6A5A8TX70 USP32P1-208ENST00000506594 1164 ntBASIC13.25□□□□□ -0.29
COL6A5A8TX70 SERF1B-208ENST00000515588 792 ntTSL 2 BASIC13.25□□□□□ -0.29
COL6A5A8TX70 MMP17-203ENST00000535004 719 ntTSL 3 BASIC13.25□□□□□ -0.29
COL6A5A8TX70 MIR4722-201ENST00000578292 60 ntBASIC13.25□□□□□ -0.29
COL6A5A8TX70 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC13.25□□□□□ -0.29
COL6A5A8TX70 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
COL6A5A8TX70 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
COL6A5A8TX70 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC13.25□□□□□ -0.29
COL6A5A8TX70 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
COL6A5A8TX70 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC13.25□□□□□ -0.29
COL6A5A8TX70 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
COL6A5A8TX70 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC13.25□□□□□ -0.29
COL6A5A8TX70 EIF5A-206ENST00000571955 1366 ntAPPRIS P1 TSL 5 BASIC13.25□□□□□ -0.29
COL6A5A8TX70 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
COL6A5A8TX70 MKRN3-203ENST00000568252 1312 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
COL6A5A8TX70 AURKAIP1-201ENST00000321751 798 ntAPPRIS P1 TSL 2 BASIC13.25□□□□□ -0.29
COL6A5A8TX70 NSL1-201ENST00000366976 722 ntTSL 2 BASIC13.25□□□□□ -0.29
COL6A5A8TX70 C1orf159-201ENST00000379319 1097 ntAPPRIS P3 TSL 5 BASIC13.25□□□□□ -0.29
COL6A5A8TX70 ITPA-201ENST00000380113 1185 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
COL6A5A8TX70 AC104457.1-201ENST00000401024 814 ntBASIC13.25□□□□□ -0.29
COL6A5A8TX70 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC13.25□□□□□ -0.29
COL6A5A8TX70 CTBP2P5-201ENST00000454986 1264 ntBASIC13.25□□□□□ -0.29
COL6A5A8TX70 LLPH-AS1-201ENST00000510317 623 ntTSL 4 BASIC13.25□□□□□ -0.29
COL6A5A8TX70 STK19B-204ENST00000512515 211 ntBASIC13.25□□□□□ -0.29
COL6A5A8TX70 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
COL6A5A8TX70 AC133550.2-201ENST00000567731 544 ntTSL 4 BASIC13.25□□□□□ -0.29
COL6A5A8TX70 MIR8072-201ENST00000614241 80 ntBASIC13.25□□□□□ -0.29
COL6A5A8TX70 AC006449.3-201ENST00000620144 563 ntTSL 4 BASIC13.25□□□□□ -0.29
COL6A5A8TX70 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC13.25□□□□□ -0.29
COL6A5A8TX70 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC13.25□□□□□ -0.29
COL6A5A8TX70 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC13.24□□□□□ -0.29
COL6A5A8TX70 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC13.24□□□□□ -0.29
COL6A5A8TX70 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
COL6A5A8TX70 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
COL6A5A8TX70 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
COL6A5A8TX70 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
COL6A5A8TX70 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC13.24□□□□□ -0.29
COL6A5A8TX70 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
COL6A5A8TX70 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
COL6A5A8TX70 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
COL6A5A8TX70 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
COL6A5A8TX70 HACD3-202ENST00000442729 1332 ntTSL 2 BASIC13.24□□□□□ -0.29
COL6A5A8TX70 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
COL6A5A8TX70 CIDEA-201ENST00000320477 828 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
COL6A5A8TX70 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC13.24□□□□□ -0.29
Retrieved 100 of 98,524 protein–RNA pairs in 23.5 ms