Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC16.61■□□□□ 0.25
PCDHGA1Q9Y5H4 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC16.61■□□□□ 0.25
PCDHGA1Q9Y5H4 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC16.61■□□□□ 0.25
PCDHGA1Q9Y5H4 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC16.61■□□□□ 0.25
PCDHGA1Q9Y5H4 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
PCDHGA1Q9Y5H4 UBXN1-201ENST00000294119 1291 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
PCDHGA1Q9Y5H4 AL355306.1-201ENST00000415580 579 ntBASIC16.61■□□□□ 0.25
PCDHGA1Q9Y5H4 PNKD-204ENST00000436005 978 ntTSL 5 BASIC16.61■□□□□ 0.25
PCDHGA1Q9Y5H4 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC16.61■□□□□ 0.25
PCDHGA1Q9Y5H4 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC16.61■□□□□ 0.25
PCDHGA1Q9Y5H4 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
PCDHGA1Q9Y5H4 AZIN1-AS1-212ENST00000520538 476 ntTSL 3 BASIC16.61■□□□□ 0.25
PCDHGA1Q9Y5H4 AL512356.2-201ENST00000546955 174 ntBASIC16.61■□□□□ 0.25
PCDHGA1Q9Y5H4 AC093520.2-201ENST00000561830 333 ntBASIC16.61■□□□□ 0.25
PCDHGA1Q9Y5H4 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC16.61■□□□□ 0.25
PCDHGA1Q9Y5H4 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
PCDHGA1Q9Y5H4 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
PCDHGA1Q9Y5H4 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
PCDHGA1Q9Y5H4 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
PCDHGA1Q9Y5H4 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
PCDHGA1Q9Y5H4 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
PCDHGA1Q9Y5H4 CROCCP3-202ENST00000420820 1947 ntBASIC16.6■□□□□ 0.25
PCDHGA1Q9Y5H4 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC16.6■□□□□ 0.25
PCDHGA1Q9Y5H4 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
PCDHGA1Q9Y5H4 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC16.6■□□□□ 0.25
PCDHGA1Q9Y5H4 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
PCDHGA1Q9Y5H4 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
PCDHGA1Q9Y5H4 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
PCDHGA1Q9Y5H4 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
PCDHGA1Q9Y5H4 S100A14-204ENST00000368702 1218 ntAPPRIS P1 TSL 3 BASIC16.6■□□□□ 0.25
PCDHGA1Q9Y5H4 AL671277.1-201ENST00000429656 993 ntBASIC16.6■□□□□ 0.25
PCDHGA1Q9Y5H4 OST4-203ENST00000456793 561 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
PCDHGA1Q9Y5H4 S100A14-206ENST00000476873 1025 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
PCDHGA1Q9Y5H4 RN7SL589P-201ENST00000481268 310 ntBASIC16.6■□□□□ 0.25
PCDHGA1Q9Y5H4 INGX-202ENST00000489074 768 ntBASIC16.6■□□□□ 0.25
PCDHGA1Q9Y5H4 AL645728.2-201ENST00000641974 660 ntBASIC16.6■□□□□ 0.25
PCDHGA1Q9Y5H4 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
PCDHGA1Q9Y5H4 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC16.6■□□□□ 0.25
PCDHGA1Q9Y5H4 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC16.6■□□□□ 0.25
PCDHGA1Q9Y5H4 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
PCDHGA1Q9Y5H4 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC16.6■□□□□ 0.25
PCDHGA1Q9Y5H4 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC16.6■□□□□ 0.25
PCDHGA1Q9Y5H4 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
PCDHGA1Q9Y5H4 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
PCDHGA1Q9Y5H4 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
PCDHGA1Q9Y5H4 CLMP-201ENST00000448775 5072 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
PCDHGA1Q9Y5H4 FBXL7-202ENST00000504595 4562 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
PCDHGA1Q9Y5H4 EPB41L3-207ENST00000545076 3190 ntAPPRIS ALT2 TSL 2 BASIC16.59■□□□□ 0.25
PCDHGA1Q9Y5H4 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
PCDHGA1Q9Y5H4 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
PCDHGA1Q9Y5H4 FLYWCH1P1-201ENST00000460917 1874 ntBASIC16.59■□□□□ 0.25
PCDHGA1Q9Y5H4 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC16.59■□□□□ 0.25
PCDHGA1Q9Y5H4 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
PCDHGA1Q9Y5H4 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
PCDHGA1Q9Y5H4 ENSA-206ENST00000361631 725 ntTSL 2 BASIC16.59■□□□□ 0.25
PCDHGA1Q9Y5H4 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC16.59■□□□□ 0.25
PCDHGA1Q9Y5H4 BASP1P1-201ENST00000430708 665 ntBASIC16.59■□□□□ 0.25
PCDHGA1Q9Y5H4 SPDYE11-202ENST00000450699 704 ntBASIC16.59■□□□□ 0.25
PCDHGA1Q9Y5H4 SPDYE9P-201ENST00000570642 692 ntBASIC16.59■□□□□ 0.25
PCDHGA1Q9Y5H4 AL390955.2-201ENST00000603032 514 ntBASIC16.59■□□□□ 0.25
PCDHGA1Q9Y5H4 SPDYE10P-202ENST00000612005 668 ntBASIC16.59■□□□□ 0.25
PCDHGA1Q9Y5H4 SPDYE8P-202ENST00000612377 668 ntBASIC16.59■□□□□ 0.25
PCDHGA1Q9Y5H4 NNAT-201ENST00000062104 1297 ntAPPRIS P4 TSL 1 (best) BASIC16.59■□□□□ 0.25
PCDHGA1Q9Y5H4 C8orf76-201ENST00000276704 1341 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
PCDHGA1Q9Y5H4 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC16.59■□□□□ 0.25
PCDHGA1Q9Y5H4 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
PCDHGA1Q9Y5H4 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
PCDHGA1Q9Y5H4 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
PCDHGA1Q9Y5H4 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
PCDHGA1Q9Y5H4 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
PCDHGA1Q9Y5H4 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
PCDHGA1Q9Y5H4 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC16.59■□□□□ 0.25
PCDHGA1Q9Y5H4 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
PCDHGA1Q9Y5H4 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
PCDHGA1Q9Y5H4 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC16.59■□□□□ 0.25
PCDHGA1Q9Y5H4 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
PCDHGA1Q9Y5H4 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
PCDHGA1Q9Y5H4 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
PCDHGA1Q9Y5H4 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC16.58■□□□□ 0.25
PCDHGA1Q9Y5H4 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC16.58■□□□□ 0.25
PCDHGA1Q9Y5H4 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC16.58■□□□□ 0.25
PCDHGA1Q9Y5H4 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC16.58■□□□□ 0.25
PCDHGA1Q9Y5H4 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC16.58■□□□□ 0.25
PCDHGA1Q9Y5H4 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC16.58■□□□□ 0.25
PCDHGA1Q9Y5H4 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
PCDHGA1Q9Y5H4 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
PCDHGA1Q9Y5H4 SOWAHC-201ENST00000356454 4657 ntAPPRIS P1 BASIC16.58■□□□□ 0.25
PCDHGA1Q9Y5H4 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
PCDHGA1Q9Y5H4 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
PCDHGA1Q9Y5H4 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
PCDHGA1Q9Y5H4 HSD17B10-203ENST00000375304 916 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
PCDHGA1Q9Y5H4 FBXO44-205ENST00000376768 959 ntTSL 2 BASIC16.58■□□□□ 0.24
PCDHGA1Q9Y5H4 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC16.58■□□□□ 0.24
PCDHGA1Q9Y5H4 AC005237.2-201ENST00000434368 219 ntBASIC16.58■□□□□ 0.24
PCDHGA1Q9Y5H4 AC140658.5-201ENST00000438532 169 ntBASIC16.58■□□□□ 0.24
PCDHGA1Q9Y5H4 RAD51D-205ENST00000460118 1064 ntTSL 5 BASIC16.58■□□□□ 0.24
PCDHGA1Q9Y5H4 AC069335.1-201ENST00000489972 472 ntBASIC16.58■□□□□ 0.24
PCDHGA1Q9Y5H4 AC093214.1-201ENST00000511688 1107 ntBASIC16.58■□□□□ 0.24
PCDHGA1Q9Y5H4 GALNT9-208ENST00000541995 1001 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
PCDHGA1Q9Y5H4 VPS29-207ENST00000549970 818 ntTSL 3 BASIC16.58■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 22.7 ms