Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
VPS4AQ9UN37 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
VPS4AQ9UN37 TSPY2-201ENST00000320701 1161 ntAPPRIS P5 TSL 1 (best) BASIC16.84■□□□□ 0.29
VPS4AQ9UN37 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
VPS4AQ9UN37 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC16.84■□□□□ 0.29
VPS4AQ9UN37 TLE1-202ENST00000376484 666 ntTSL 3 BASIC16.84■□□□□ 0.29
VPS4AQ9UN37 HES2-202ENST00000377836 507 ntTSL 2 BASIC16.84■□□□□ 0.29
VPS4AQ9UN37 FAM220CP-201ENST00000395253 831 ntBASIC16.84■□□□□ 0.29
VPS4AQ9UN37 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC16.84■□□□□ 0.29
VPS4AQ9UN37 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC16.84■□□□□ 0.29
VPS4AQ9UN37 TSPY2-203ENST00000429039 779 ntAPPRIS ALT2 TSL 2 BASIC16.84■□□□□ 0.29
VPS4AQ9UN37 DDX43P3-201ENST00000441064 443 ntBASIC16.84■□□□□ 0.29
VPS4AQ9UN37 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC16.84■□□□□ 0.29
VPS4AQ9UN37 KRT18P58-201ENST00000527480 1120 ntBASIC16.84■□□□□ 0.29
VPS4AQ9UN37 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC16.84■□□□□ 0.29
VPS4AQ9UN37 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC16.84■□□□□ 0.29
VPS4AQ9UN37 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC16.84■□□□□ 0.29
VPS4AQ9UN37 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC16.84■□□□□ 0.29
VPS4AQ9UN37 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC16.84■□□□□ 0.29
VPS4AQ9UN37 AC243773.2-203ENST00000612281 640 ntTSL 3 BASIC16.84■□□□□ 0.29
VPS4AQ9UN37 LITAF-220ENST00000620789 692 ntTSL 5 BASIC16.84■□□□□ 0.29
VPS4AQ9UN37 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC16.84■□□□□ 0.29
VPS4AQ9UN37 IL9RP2-201ENST00000423948 1312 ntBASIC16.84■□□□□ 0.29
VPS4AQ9UN37 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC16.84■□□□□ 0.29
VPS4AQ9UN37 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
VPS4AQ9UN37 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
VPS4AQ9UN37 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC16.84■□□□□ 0.29
VPS4AQ9UN37 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC16.84■□□□□ 0.29
VPS4AQ9UN37 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
VPS4AQ9UN37 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC16.84■□□□□ 0.29
VPS4AQ9UN37 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
VPS4AQ9UN37 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
VPS4AQ9UN37 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
VPS4AQ9UN37 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
VPS4AQ9UN37 NFE2L3-201ENST00000056233 3686 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
VPS4AQ9UN37 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC16.84■□□□□ 0.29
VPS4AQ9UN37 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
VPS4AQ9UN37 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
VPS4AQ9UN37 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC16.84■□□□□ 0.29
VPS4AQ9UN37 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC16.84■□□□□ 0.29
VPS4AQ9UN37 GABBR1-205ENST00000377034 4527 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
VPS4AQ9UN37 ATXN2-201ENST00000377617 4702 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.29
VPS4AQ9UN37 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
VPS4AQ9UN37 CNTNAP3-201ENST00000297668 5064 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
VPS4AQ9UN37 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
VPS4AQ9UN37 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC16.83■□□□□ 0.28
VPS4AQ9UN37 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC16.83■□□□□ 0.28
VPS4AQ9UN37 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
VPS4AQ9UN37 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
VPS4AQ9UN37 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
VPS4AQ9UN37 FAM129B-201ENST00000373312 3957 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
VPS4AQ9UN37 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC16.83■□□□□ 0.28
VPS4AQ9UN37 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC16.83■□□□□ 0.28
VPS4AQ9UN37 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
VPS4AQ9UN37 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
VPS4AQ9UN37 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC16.83■□□□□ 0.28
VPS4AQ9UN37 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC16.83■□□□□ 0.28
VPS4AQ9UN37 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
VPS4AQ9UN37 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC16.83■□□□□ 0.28
VPS4AQ9UN37 VENTXP7-201ENST00000475503 772 ntBASIC16.83■□□□□ 0.28
VPS4AQ9UN37 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
VPS4AQ9UN37 AP003733.1-201ENST00000491725 852 ntBASIC16.83■□□□□ 0.28
VPS4AQ9UN37 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC16.83■□□□□ 0.28
VPS4AQ9UN37 AC093909.1-201ENST00000504731 1122 ntBASIC16.83■□□□□ 0.28
VPS4AQ9UN37 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC16.83■□□□□ 0.28
VPS4AQ9UN37 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC16.83■□□□□ 0.28
VPS4AQ9UN37 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC16.83■□□□□ 0.28
VPS4AQ9UN37 AC233702.3-201ENST00000578656 1387 ntBASIC16.83■□□□□ 0.28
VPS4AQ9UN37 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC16.83■□□□□ 0.28
VPS4AQ9UN37 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC16.83■□□□□ 0.28
VPS4AQ9UN37 PDZD8-201ENST00000334464 9699 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
VPS4AQ9UN37 MAPKAP1-208ENST00000394063 2977 ntTSL 5 BASIC16.83■□□□□ 0.28
VPS4AQ9UN37 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC16.83■□□□□ 0.28
VPS4AQ9UN37 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
VPS4AQ9UN37 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC16.83■□□□□ 0.28
VPS4AQ9UN37 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.28
VPS4AQ9UN37 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
VPS4AQ9UN37 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
VPS4AQ9UN37 ZNF264-202ENST00000536056 2078 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
VPS4AQ9UN37 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC16.82■□□□□ 0.28
VPS4AQ9UN37 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC16.82■□□□□ 0.28
VPS4AQ9UN37 PDS5A-201ENST00000303538 7176 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
VPS4AQ9UN37 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
VPS4AQ9UN37 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
VPS4AQ9UN37 FGFR2-215ENST00000457416 3061 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
VPS4AQ9UN37 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
VPS4AQ9UN37 MED29-202ENST00000594368 1471 ntTSL 2 BASIC16.82■□□□□ 0.28
VPS4AQ9UN37 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC16.82■□□□□ 0.28
VPS4AQ9UN37 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
VPS4AQ9UN37 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC16.82■□□□□ 0.28
VPS4AQ9UN37 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC16.82■□□□□ 0.28
VPS4AQ9UN37 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
VPS4AQ9UN37 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
VPS4AQ9UN37 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
VPS4AQ9UN37 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
VPS4AQ9UN37 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC16.82■□□□□ 0.28
VPS4AQ9UN37 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
VPS4AQ9UN37 TSPY12P-201ENST00000421279 868 ntBASIC16.82■□□□□ 0.28
VPS4AQ9UN37 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC16.82■□□□□ 0.28
VPS4AQ9UN37 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC16.82■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 31.8 ms