Protein–RNA interactions for Protein: Q9NXB0

MKS1, Meckel syndrome type 1 protein, humanhuman

Predictions only

Length 559 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MKS1Q9NXB0 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
MKS1Q9NXB0 AL353801.3-201ENST00000609898 542 ntBASIC17.13■□□□□ 0.33
MKS1Q9NXB0 WDR6-223ENST00000627177 207 ntTSL 2 BASIC17.13■□□□□ 0.33
MKS1Q9NXB0 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
MKS1Q9NXB0 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC17.13■□□□□ 0.33
MKS1Q9NXB0 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
MKS1Q9NXB0 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC17.13■□□□□ 0.33
MKS1Q9NXB0 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
MKS1Q9NXB0 ZSCAN2-214ENST00000546148 2242 ntAPPRIS P2 TSL 2 BASIC17.13■□□□□ 0.33
MKS1Q9NXB0 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC17.13■□□□□ 0.33
MKS1Q9NXB0 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
MKS1Q9NXB0 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC17.13■□□□□ 0.33
MKS1Q9NXB0 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
MKS1Q9NXB0 HNRNPA3-201ENST00000392524 2067 ntAPPRIS P3 TSL 5 BASIC17.12■□□□□ 0.33
MKS1Q9NXB0 ADGRG2-208ENST00000379873 4698 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
MKS1Q9NXB0 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC17.12■□□□□ 0.33
MKS1Q9NXB0 GPR89P-201ENST00000407924 1495 ntBASIC17.12■□□□□ 0.33
MKS1Q9NXB0 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC17.12■□□□□ 0.33
MKS1Q9NXB0 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
MKS1Q9NXB0 CTNNB1-210ENST00000453024 2841 ntTSL 2 BASIC17.12■□□□□ 0.33
MKS1Q9NXB0 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
MKS1Q9NXB0 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC17.12■□□□□ 0.33
MKS1Q9NXB0 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
MKS1Q9NXB0 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
MKS1Q9NXB0 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC17.12■□□□□ 0.33
MKS1Q9NXB0 ADAM15-228ENST00000531455 2678 ntAPPRIS ALT2 TSL 2 BASIC17.12■□□□□ 0.33
MKS1Q9NXB0 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
MKS1Q9NXB0 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
MKS1Q9NXB0 BAALC-202ENST00000306391 243 ntTSL 5 BASIC17.12■□□□□ 0.33
MKS1Q9NXB0 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
MKS1Q9NXB0 BAALC-204ENST00000330955 222 ntTSL 5 BASIC17.12■□□□□ 0.33
MKS1Q9NXB0 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
MKS1Q9NXB0 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC17.12■□□□□ 0.33
MKS1Q9NXB0 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC17.12■□□□□ 0.33
MKS1Q9NXB0 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
MKS1Q9NXB0 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC17.12■□□□□ 0.33
MKS1Q9NXB0 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC17.12■□□□□ 0.33
MKS1Q9NXB0 AL135999.2-201ENST00000622438 1686 ntBASIC17.12■□□□□ 0.33
MKS1Q9NXB0 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC17.12■□□□□ 0.33
MKS1Q9NXB0 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
MKS1Q9NXB0 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC17.12■□□□□ 0.33
MKS1Q9NXB0 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
MKS1Q9NXB0 RPL3L-201ENST00000268661 2182 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
MKS1Q9NXB0 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
MKS1Q9NXB0 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
MKS1Q9NXB0 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC17.12■□□□□ 0.33
MKS1Q9NXB0 MAPK8IP3-201ENST00000250894 5661 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
MKS1Q9NXB0 AL353593.2-201ENST00000602529 1483 ntBASIC17.12■□□□□ 0.33
MKS1Q9NXB0 TLE3-212ENST00000558201 2766 ntTSL 5 BASIC17.11■□□□□ 0.33
MKS1Q9NXB0 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
MKS1Q9NXB0 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
MKS1Q9NXB0 FAM214B-206ENST00000603301 3256 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
MKS1Q9NXB0 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC17.11■□□□□ 0.33
MKS1Q9NXB0 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
MKS1Q9NXB0 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
MKS1Q9NXB0 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
MKS1Q9NXB0 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
MKS1Q9NXB0 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC17.11■□□□□ 0.33
MKS1Q9NXB0 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
MKS1Q9NXB0 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
MKS1Q9NXB0 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
MKS1Q9NXB0 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
MKS1Q9NXB0 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
MKS1Q9NXB0 VKORC1-205ENST00000394975 1012 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
MKS1Q9NXB0 SNX5-210ENST00000481323 562 ntTSL 3 BASIC17.11■□□□□ 0.33
MKS1Q9NXB0 KLK12-205ENST00000529888 735 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
MKS1Q9NXB0 AC010203.1-204ENST00000548782 407 ntBASIC17.11■□□□□ 0.33
MKS1Q9NXB0 RABAC1-208ENST00000601078 728 ntTSL 3 BASIC17.11■□□□□ 0.33
MKS1Q9NXB0 AC011558.1-201ENST00000623459 338 ntBASIC17.11■□□□□ 0.33
MKS1Q9NXB0 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC17.11■□□□□ 0.33
MKS1Q9NXB0 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
MKS1Q9NXB0 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
MKS1Q9NXB0 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
MKS1Q9NXB0 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC17.11■□□□□ 0.33
MKS1Q9NXB0 PI4KAP1-201ENST00000610959 2425 ntTSL 2 BASIC17.11■□□□□ 0.33
MKS1Q9NXB0 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
MKS1Q9NXB0 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
MKS1Q9NXB0 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
MKS1Q9NXB0 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
MKS1Q9NXB0 KRT8P10-201ENST00000450021 1447 ntBASIC17.11■□□□□ 0.33
MKS1Q9NXB0 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
MKS1Q9NXB0 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC17.11■□□□□ 0.33
MKS1Q9NXB0 NBL1-211ENST00000618761 2051 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
MKS1Q9NXB0 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
MKS1Q9NXB0 ZNF514-202ENST00000411425 2755 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
MKS1Q9NXB0 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC17.11■□□□□ 0.33
MKS1Q9NXB0 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
MKS1Q9NXB0 PDE12-202ENST00000487257 3040 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
MKS1Q9NXB0 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
MKS1Q9NXB0 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC17.1■□□□□ 0.33
MKS1Q9NXB0 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC17.1■□□□□ 0.33
MKS1Q9NXB0 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
MKS1Q9NXB0 AL512625.1-201ENST00000305709 2541 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
MKS1Q9NXB0 ABTB1-201ENST00000232744 1965 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
MKS1Q9NXB0 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
MKS1Q9NXB0 NPRL3-201ENST00000399953 2784 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
MKS1Q9NXB0 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
MKS1Q9NXB0 N4BP3-201ENST00000274605 6080 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
MKS1Q9NXB0 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
MKS1Q9NXB0 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 24.2 ms