Protein–RNA interactions for Protein: Q9C037

TRIM4, E3 ubiquitin-protein ligase TRIM4, humanhuman

Predictions only

Length 500 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM4Q9C037 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
TRIM4Q9C037 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
TRIM4Q9C037 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC17.41■□□□□ 0.38
TRIM4Q9C037 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
TRIM4Q9C037 AC092183.1-201ENST00000469884 875 ntBASIC17.41■□□□□ 0.38
TRIM4Q9C037 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC17.41■□□□□ 0.38
TRIM4Q9C037 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
TRIM4Q9C037 AC011498.5-201ENST00000592027 486 ntBASIC17.41■□□□□ 0.38
TRIM4Q9C037 SEMA5B-211ENST00000616742 4933 ntAPPRIS P3 TSL 5 BASIC17.41■□□□□ 0.38
TRIM4Q9C037 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
TRIM4Q9C037 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
TRIM4Q9C037 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
TRIM4Q9C037 GCLM-201ENST00000370238 4857 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
TRIM4Q9C037 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
TRIM4Q9C037 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
TRIM4Q9C037 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC17.41■□□□□ 0.38
TRIM4Q9C037 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
TRIM4Q9C037 ADD1-205ENST00000398125 4079 ntTSL 5 BASIC17.41■□□□□ 0.38
TRIM4Q9C037 DOC2GP-204ENST00000639052 2548 ntBASIC17.41■□□□□ 0.38
TRIM4Q9C037 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
TRIM4Q9C037 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
TRIM4Q9C037 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
TRIM4Q9C037 PHRF1-201ENST00000264555 5523 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
TRIM4Q9C037 ZC3H7B-201ENST00000352645 5909 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
TRIM4Q9C037 RBFOX1-212ENST00000550418 4775 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
TRIM4Q9C037 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
TRIM4Q9C037 PCDHA13-202ENST00000409494 4884 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
TRIM4Q9C037 LRFN2-201ENST00000338305 3270 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
TRIM4Q9C037 CD34-202ENST00000356522 2874 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
TRIM4Q9C037 MYOC-201ENST00000037502 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
TRIM4Q9C037 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
TRIM4Q9C037 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
TRIM4Q9C037 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC17.4■□□□□ 0.38
TRIM4Q9C037 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC17.4■□□□□ 0.38
TRIM4Q9C037 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
TRIM4Q9C037 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
TRIM4Q9C037 PIAS4-201ENST00000262971 3159 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
TRIM4Q9C037 HBZP1-201ENST00000354915 429 ntBASIC17.4■□□□□ 0.38
TRIM4Q9C037 CGB7-201ENST00000377280 918 ntAPPRIS P1 TSL 3 BASIC17.4■□□□□ 0.38
TRIM4Q9C037 ELP6-205ENST00000439305 880 ntTSL 2 BASIC17.4■□□□□ 0.38
TRIM4Q9C037 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
TRIM4Q9C037 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC17.4■□□□□ 0.38
TRIM4Q9C037 RASA4DP-201ENST00000460726 1199 ntBASIC17.4■□□□□ 0.38
TRIM4Q9C037 AC092597.1-201ENST00000487352 616 ntBASIC17.4■□□□□ 0.38
TRIM4Q9C037 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC17.4■□□□□ 0.38
TRIM4Q9C037 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC17.4■□□□□ 0.38
TRIM4Q9C037 AP002469.2-201ENST00000531724 424 ntBASIC17.4■□□□□ 0.38
TRIM4Q9C037 AC092865.5-201ENST00000545435 363 ntBASIC17.4■□□□□ 0.38
TRIM4Q9C037 PNN-202ENST00000553331 656 ntTSL 3 BASIC17.4■□□□□ 0.38
TRIM4Q9C037 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC17.4■□□□□ 0.38
TRIM4Q9C037 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
TRIM4Q9C037 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
TRIM4Q9C037 CXorf38-202ENST00000378421 2380 ntTSL 2 BASIC17.4■□□□□ 0.38
TRIM4Q9C037 TGFBR2-202ENST00000359013 4605 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
TRIM4Q9C037 PTGDR2-201ENST00000332539 2895 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
TRIM4Q9C037 NIPA2-204ENST00000398014 3130 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
TRIM4Q9C037 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC17.4■□□□□ 0.38
TRIM4Q9C037 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC17.4■□□□□ 0.38
TRIM4Q9C037 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
TRIM4Q9C037 ANTXR1-201ENST00000303714 5859 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
TRIM4Q9C037 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
TRIM4Q9C037 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
TRIM4Q9C037 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC17.4■□□□□ 0.38
TRIM4Q9C037 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.38
TRIM4Q9C037 SESN1-204ENST00000436639 3509 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
TRIM4Q9C037 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC17.39■□□□□ 0.38
TRIM4Q9C037 AL136379.1-201ENST00000623471 2642 ntBASIC17.39■□□□□ 0.37
TRIM4Q9C037 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
TRIM4Q9C037 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
TRIM4Q9C037 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
TRIM4Q9C037 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC17.39■□□□□ 0.37
TRIM4Q9C037 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
TRIM4Q9C037 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC17.39■□□□□ 0.37
TRIM4Q9C037 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC17.39■□□□□ 0.37
TRIM4Q9C037 TBX5-203ENST00000405440 2203 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
TRIM4Q9C037 CCNA2-202ENST00000618014 2797 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
TRIM4Q9C037 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC17.39■□□□□ 0.37
TRIM4Q9C037 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
TRIM4Q9C037 MRPL3P1-201ENST00000400109 1033 ntBASIC17.39■□□□□ 0.37
TRIM4Q9C037 MIR1233-2-201ENST00000408138 82 ntBASIC17.39■□□□□ 0.37
TRIM4Q9C037 MIR1233-1-201ENST00000408722 82 ntBASIC17.39■□□□□ 0.37
TRIM4Q9C037 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC17.39■□□□□ 0.37
TRIM4Q9C037 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
TRIM4Q9C037 SLC25A6P5-201ENST00000435663 894 ntBASIC17.39■□□□□ 0.37
TRIM4Q9C037 NUS1P1-201ENST00000446295 882 ntBASIC17.39■□□□□ 0.37
TRIM4Q9C037 PHGR1-201ENST00000448599 436 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
TRIM4Q9C037 AC091304.2-201ENST00000564639 760 ntBASIC17.39■□□□□ 0.37
TRIM4Q9C037 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
TRIM4Q9C037 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
TRIM4Q9C037 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC17.39■□□□□ 0.37
TRIM4Q9C037 CNP-201ENST00000393888 2583 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
TRIM4Q9C037 ABCB10-201ENST00000344517 3857 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
TRIM4Q9C037 MAP2K7-202ENST00000397981 3430 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
TRIM4Q9C037 CCDC155-201ENST00000447857 2378 ntAPPRIS P2 TSL 1 (best) BASIC17.39■□□□□ 0.37
TRIM4Q9C037 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC17.39■□□□□ 0.37
TRIM4Q9C037 LRRN2-203ENST00000367177 3463 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
TRIM4Q9C037 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
TRIM4Q9C037 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC17.39■□□□□ 0.37
TRIM4Q9C037 ABCG5-201ENST00000260645 2740 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
TRIM4Q9C037 IL12RB2-205ENST00000541374 3849 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 27.7 ms