Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 LINC01160-202ENST00000450155 894 ntTSL 3 BASIC22.18■■□□□ 1.14
SHANK3Q9BYB0 AHSA2-208ENST00000489653 1197 ntAPPRIS P1 TSL 5 BASIC22.18■■□□□ 1.14
SHANK3Q9BYB0 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC22.18■■□□□ 1.14
SHANK3Q9BYB0 AC095060.1-201ENST00000502455 549 ntTSL 4 BASIC22.18■■□□□ 1.14
SHANK3Q9BYB0 SERBP1P5-201ENST00000510079 1181 ntBASIC22.18■■□□□ 1.14
SHANK3Q9BYB0 IGHV3-42-201ENST00000520410 361 ntBASIC22.18■■□□□ 1.14
SHANK3Q9BYB0 LINC01775-201ENST00000587826 371 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
SHANK3Q9BYB0 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
SHANK3Q9BYB0 SPDYE12P-201ENST00000618416 771 ntBASIC22.18■■□□□ 1.14
SHANK3Q9BYB0 MIR6752-201ENST00000618442 71 ntBASIC22.18■■□□□ 1.14
SHANK3Q9BYB0 AC016027.1-202ENST00000607927 1699 ntBASIC22.18■■□□□ 1.14
SHANK3Q9BYB0 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC22.18■■□□□ 1.14
SHANK3Q9BYB0 SCLT1-205ENST00000503401 1604 ntAPPRIS ALT2 TSL 3 BASIC22.18■■□□□ 1.14
SHANK3Q9BYB0 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC22.18■■□□□ 1.14
SHANK3Q9BYB0 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC22.18■■□□□ 1.14
SHANK3Q9BYB0 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
SHANK3Q9BYB0 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC22.18■■□□□ 1.14
SHANK3Q9BYB0 SUMO1-201ENST00000392244 831 ntTSL 2 BASIC22.17■■□□□ 1.14
SHANK3Q9BYB0 SUMO1-209ENST00000409712 761 ntTSL 2 BASIC22.17■■□□□ 1.14
SHANK3Q9BYB0 AC142381.1-201ENST00000426099 345 ntBASIC22.17■■□□□ 1.14
SHANK3Q9BYB0 HNRNPA1P40-201ENST00000426371 1278 ntBASIC22.17■■□□□ 1.14
SHANK3Q9BYB0 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC22.17■■□□□ 1.14
SHANK3Q9BYB0 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
SHANK3Q9BYB0 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC22.17■■□□□ 1.14
SHANK3Q9BYB0 CLEC17A-202ENST00000417570 1399 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
SHANK3Q9BYB0 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
SHANK3Q9BYB0 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
SHANK3Q9BYB0 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
SHANK3Q9BYB0 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
SHANK3Q9BYB0 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC22.17■■□□□ 1.14
SHANK3Q9BYB0 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC22.17■■□□□ 1.14
SHANK3Q9BYB0 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC22.17■■□□□ 1.14
SHANK3Q9BYB0 ADIRF-201ENST00000372013 917 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
SHANK3Q9BYB0 AL513327.2-201ENST00000432703 490 ntTSL 2 BASIC22.17■■□□□ 1.14
SHANK3Q9BYB0 AC002310.2-201ENST00000486926 950 ntTSL 2 BASIC22.17■■□□□ 1.14
SHANK3Q9BYB0 RBAKDN-201ENST00000498308 514 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
SHANK3Q9BYB0 ATG10-207ENST00000513443 978 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
SHANK3Q9BYB0 ZNF667-AS1-204ENST00000588158 921 ntTSL 3 BASIC22.17■■□□□ 1.14
SHANK3Q9BYB0 CECR7-204ENST00000609932 568 ntTSL 2 BASIC22.17■■□□□ 1.14
SHANK3Q9BYB0 AC008267.7-201ENST00000624570 1194 ntBASIC22.17■■□□□ 1.14
SHANK3Q9BYB0 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC22.17■■□□□ 1.14
SHANK3Q9BYB0 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC22.17■■□□□ 1.14
SHANK3Q9BYB0 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
SHANK3Q9BYB0 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC22.16■■□□□ 1.14
SHANK3Q9BYB0 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC22.16■■□□□ 1.14
SHANK3Q9BYB0 EGFEM1P-202ENST00000431685 1563 ntBASIC22.16■■□□□ 1.14
SHANK3Q9BYB0 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
SHANK3Q9BYB0 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC22.16■■□□□ 1.14
SHANK3Q9BYB0 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
SHANK3Q9BYB0 RNF151-201ENST00000321392 786 ntAPPRIS ALT2 TSL 1 (best) BASIC22.16■■□□□ 1.14
SHANK3Q9BYB0 EDF1-203ENST00000371649 790 ntTSL 2 BASIC22.16■■□□□ 1.14
SHANK3Q9BYB0 DICER1-AS1-202ENST00000439819 810 ntTSL 3 BASIC22.16■■□□□ 1.14
SHANK3Q9BYB0 LACTB2-203ENST00000522447 1034 ntAPPRIS P1 TSL 2 BASIC22.16■■□□□ 1.14
SHANK3Q9BYB0 RAB30-AS1-202ENST00000526795 567 ntTSL 5 BASIC22.16■■□□□ 1.14
SHANK3Q9BYB0 NOP2-220ENST00000545915 630 ntTSL 2 BASIC22.16■■□□□ 1.14
SHANK3Q9BYB0 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC22.16■■□□□ 1.14
SHANK3Q9BYB0 RNF151-203ENST00000569714 796 ntAPPRIS P2 TSL 1 (best) BASIC22.16■■□□□ 1.14
SHANK3Q9BYB0 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
SHANK3Q9BYB0 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC22.16■■□□□ 1.14
SHANK3Q9BYB0 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC22.15■■□□□ 1.14
SHANK3Q9BYB0 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC22.15■■□□□ 1.14
SHANK3Q9BYB0 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC22.15■■□□□ 1.14
SHANK3Q9BYB0 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC22.15■■□□□ 1.14
SHANK3Q9BYB0 GRAP-202ENST00000395635 834 ntTSL 2 BASIC22.15■■□□□ 1.14
SHANK3Q9BYB0 GOLGA6L11P-201ENST00000417252 1298 ntBASIC22.15■■□□□ 1.14
SHANK3Q9BYB0 NAA50-208ENST00000497255 789 ntTSL 5 BASIC22.15■■□□□ 1.14
SHANK3Q9BYB0 EEF1D-207ENST00000524624 1084 ntAPPRIS ALT2 TSL 5 BASIC22.15■■□□□ 1.14
SHANK3Q9BYB0 AC027307.2-201ENST00000591252 911 ntBASIC22.15■■□□□ 1.14
SHANK3Q9BYB0 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC22.15■■□□□ 1.14
SHANK3Q9BYB0 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
SHANK3Q9BYB0 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC22.15■■□□□ 1.14
SHANK3Q9BYB0 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
SHANK3Q9BYB0 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
SHANK3Q9BYB0 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC22.15■■□□□ 1.14
SHANK3Q9BYB0 AC009113.1-201ENST00000570267 2443 ntBASIC22.15■■□□□ 1.14
SHANK3Q9BYB0 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
SHANK3Q9BYB0 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC22.15■■□□□ 1.14
SHANK3Q9BYB0 CALY-202ENST00000368555 783 ntTSL 2 BASIC22.14■■□□□ 1.14
SHANK3Q9BYB0 HFE-208ENST00000397022 1280 ntTSL 1 (best) BASIC22.14■■□□□ 1.14
SHANK3Q9BYB0 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC22.14■■□□□ 1.14
SHANK3Q9BYB0 PIGZ-204ENST00000443835 675 ntTSL 4 BASIC22.14■■□□□ 1.14
SHANK3Q9BYB0 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC22.14■■□□□ 1.14
SHANK3Q9BYB0 HFE-214ENST00000488199 781 ntTSL 1 (best) BASIC22.14■■□□□ 1.14
SHANK3Q9BYB0 TRMT112-206ENST00000544844 1106 ntAPPRIS P3 TSL 1 (best) BASIC22.14■■□□□ 1.14
SHANK3Q9BYB0 AC116003.1-201ENST00000578340 536 ntTSL 3 BASIC22.14■■□□□ 1.14
SHANK3Q9BYB0 AP000894.3-201ENST00000582554 351 ntTSL 5 BASIC22.14■■□□□ 1.14
SHANK3Q9BYB0 AC025048.6-201ENST00000634326 1161 ntBASIC22.14■■□□□ 1.14
SHANK3Q9BYB0 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC22.14■■□□□ 1.14
SHANK3Q9BYB0 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC22.14■■□□□ 1.14
SHANK3Q9BYB0 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC22.14■■□□□ 1.13
SHANK3Q9BYB0 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
SHANK3Q9BYB0 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC22.14■■□□□ 1.13
SHANK3Q9BYB0 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC22.14■■□□□ 1.13
SHANK3Q9BYB0 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC22.14■■□□□ 1.13
SHANK3Q9BYB0 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
SHANK3Q9BYB0 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC22.14■■□□□ 1.13
SHANK3Q9BYB0 CSNK1G2-AS1-201ENST00000314315 1252 ntTSL 1 (best) BASIC22.14■■□□□ 1.13
SHANK3Q9BYB0 WWOX-201ENST00000355860 710 ntTSL 1 (best) BASIC22.14■■□□□ 1.13
SHANK3Q9BYB0 COX5BP8-201ENST00000416911 349 ntBASIC22.14■■□□□ 1.13
SHANK3Q9BYB0 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC22.14■■□□□ 1.13
Retrieved 100 of 98,524 protein–RNA pairs in 29.9 ms