Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
TRAIPQ9BWF2 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
TRAIPQ9BWF2 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
TRAIPQ9BWF2 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
TRAIPQ9BWF2 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC19.01■□□□□ 0.63
TRAIPQ9BWF2 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC19.01■□□□□ 0.63
TRAIPQ9BWF2 ING5-201ENST00000313552 5196 ntAPPRIS P3 TSL 1 (best) BASIC19.01■□□□□ 0.63
TRAIPQ9BWF2 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC19.01■□□□□ 0.63
TRAIPQ9BWF2 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
TRAIPQ9BWF2 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
TRAIPQ9BWF2 METTL26-205ENST00000397666 726 ntTSL 2 BASIC19.01■□□□□ 0.63
TRAIPQ9BWF2 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
TRAIPQ9BWF2 HNRNPA1P28-201ENST00000424481 961 ntBASIC19.01■□□□□ 0.63
TRAIPQ9BWF2 IGHV3-65-201ENST00000523210 341 ntBASIC19.01■□□□□ 0.63
TRAIPQ9BWF2 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC19.01■□□□□ 0.63
TRAIPQ9BWF2 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC19.01■□□□□ 0.63
TRAIPQ9BWF2 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC19.01■□□□□ 0.63
TRAIPQ9BWF2 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
TRAIPQ9BWF2 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
TRAIPQ9BWF2 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC19.01■□□□□ 0.63
TRAIPQ9BWF2 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
TRAIPQ9BWF2 STK4-201ENST00000372801 2038 ntTSL 2 BASIC19.01■□□□□ 0.63
TRAIPQ9BWF2 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
TRAIPQ9BWF2 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC19.01■□□□□ 0.63
TRAIPQ9BWF2 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC19.01■□□□□ 0.63
TRAIPQ9BWF2 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
TRAIPQ9BWF2 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
TRAIPQ9BWF2 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC19.01■□□□□ 0.63
TRAIPQ9BWF2 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
TRAIPQ9BWF2 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC19■□□□□ 0.63
TRAIPQ9BWF2 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
TRAIPQ9BWF2 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
TRAIPQ9BWF2 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC19■□□□□ 0.63
TRAIPQ9BWF2 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC19■□□□□ 0.63
TRAIPQ9BWF2 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC19■□□□□ 0.63
TRAIPQ9BWF2 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC19■□□□□ 0.63
TRAIPQ9BWF2 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC19■□□□□ 0.63
TRAIPQ9BWF2 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
TRAIPQ9BWF2 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
TRAIPQ9BWF2 BEX3-201ENST00000361298 921 ntTSL 2 BASIC19■□□□□ 0.63
TRAIPQ9BWF2 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC19■□□□□ 0.63
TRAIPQ9BWF2 PMP22-202ENST00000395936 816 ntTSL 3 BASIC19■□□□□ 0.63
TRAIPQ9BWF2 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC19■□□□□ 0.63
TRAIPQ9BWF2 PRSS29P-201ENST00000440800 595 ntBASIC19■□□□□ 0.63
TRAIPQ9BWF2 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC19■□□□□ 0.63
TRAIPQ9BWF2 TCAP-202ENST00000578283 583 ntTSL 5 BASIC19■□□□□ 0.63
TRAIPQ9BWF2 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC19■□□□□ 0.63
TRAIPQ9BWF2 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC19■□□□□ 0.63
TRAIPQ9BWF2 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC19■□□□□ 0.63
TRAIPQ9BWF2 GPR89P-201ENST00000407924 1495 ntBASIC19■□□□□ 0.63
TRAIPQ9BWF2 HAUS8-201ENST00000253669 1568 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
TRAIPQ9BWF2 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC19■□□□□ 0.63
TRAIPQ9BWF2 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC19■□□□□ 0.63
TRAIPQ9BWF2 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC19■□□□□ 0.63
TRAIPQ9BWF2 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
TRAIPQ9BWF2 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
TRAIPQ9BWF2 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
TRAIPQ9BWF2 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
TRAIPQ9BWF2 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC18.99■□□□□ 0.63
TRAIPQ9BWF2 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC18.99■□□□□ 0.63
TRAIPQ9BWF2 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC18.99■□□□□ 0.63
TRAIPQ9BWF2 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC18.99■□□□□ 0.63
TRAIPQ9BWF2 YBX2P1-201ENST00000394192 760 ntBASIC18.99■□□□□ 0.63
TRAIPQ9BWF2 UPF3AP3-201ENST00000420996 769 ntBASIC18.99■□□□□ 0.63
TRAIPQ9BWF2 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC18.99■□□□□ 0.63
TRAIPQ9BWF2 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
TRAIPQ9BWF2 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC18.99■□□□□ 0.63
TRAIPQ9BWF2 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC18.99■□□□□ 0.63
TRAIPQ9BWF2 CIPC-205ENST00000555437 566 ntTSL 3 BASIC18.99■□□□□ 0.63
TRAIPQ9BWF2 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC18.99■□□□□ 0.63
TRAIPQ9BWF2 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC18.99■□□□□ 0.63
TRAIPQ9BWF2 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
TRAIPQ9BWF2 AC064836.3-201ENST00000607928 673 ntBASIC18.99■□□□□ 0.63
TRAIPQ9BWF2 AL805961.1-202ENST00000641562 540 ntBASIC18.99■□□□□ 0.63
TRAIPQ9BWF2 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC18.99■□□□□ 0.63
TRAIPQ9BWF2 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
TRAIPQ9BWF2 MAPK8IP3-201ENST00000250894 5661 ntAPPRIS P3 TSL 1 (best) BASIC18.99■□□□□ 0.63
TRAIPQ9BWF2 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
TRAIPQ9BWF2 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC18.99■□□□□ 0.63
TRAIPQ9BWF2 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
TRAIPQ9BWF2 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC18.99■□□□□ 0.63
TRAIPQ9BWF2 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC18.99■□□□□ 0.63
TRAIPQ9BWF2 GNE-204ENST00000539208 2190 ntTSL 2 BASIC18.99■□□□□ 0.63
TRAIPQ9BWF2 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
TRAIPQ9BWF2 SHE-201ENST00000304760 6243 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
TRAIPQ9BWF2 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC18.99■□□□□ 0.63
TRAIPQ9BWF2 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC18.99■□□□□ 0.63
TRAIPQ9BWF2 HTR7P1-202ENST00000624664 4411 ntBASIC18.99■□□□□ 0.63
TRAIPQ9BWF2 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC18.98■□□□□ 0.63
TRAIPQ9BWF2 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC18.98■□□□□ 0.63
TRAIPQ9BWF2 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC18.98■□□□□ 0.63
TRAIPQ9BWF2 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
TRAIPQ9BWF2 EHMT1-236ENST00000637161 5049 ntAPPRIS ALT2 TSL 5 BASIC18.98■□□□□ 0.63
TRAIPQ9BWF2 ADCY6-202ENST00000357869 5748 ntTSL 2 BASIC18.98■□□□□ 0.63
TRAIPQ9BWF2 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
TRAIPQ9BWF2 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC18.98■□□□□ 0.63
TRAIPQ9BWF2 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC18.98■□□□□ 0.63
TRAIPQ9BWF2 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
TRAIPQ9BWF2 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
TRAIPQ9BWF2 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 30.2 ms