Protein–RNA interactions for Protein: Q92900

UPF1, Regulator of nonsense transcripts 1, humanhuman

Known RBP eCLIP

Length 1,129 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1Q92900 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC26.97■■□□□ 1.913e-10■□□□□ 10.3
UPF1Q92900 BUB3-202ENST00000368859 667 ntTSL 3 BASIC24.96■■□□□ 1.593e-10■□□□□ 10.3
UPF1Q92900 BUB3-203ENST00000368865 7828 ntAPPRIS P3 TSL 1 (best) BASIC8.65□□□□□ -1.023e-10■□□□□ 10.3
UPF1Q92900 BIRC5-206ENST00000589892 747 ntTSL 224.94■■□□□ 1.582e-7■□□□□ 10.3
UPF1Q92900 CYB5R3-203ENST00000402438 1050 ntTSL 5 BASIC21.4■■□□□ 1.022e-7■□□□□ 10.3
UPF1Q92900 TMEM170A-207ENST00000569540 2331 ntTSL 2 BASIC20.02■□□□□ 0.82e-7■□□□□ 10.3
UPF1Q92900 CYB5R3-206ENST00000438270 675 ntTSL 314.83□□□□□ -0.042e-7■□□□□ 10.3
UPF1Q92900 ACSS3-203ENST00000548058 9254 ntAPPRIS P3 TSL 1 (best) BASIC11.7□□□□□ -0.542e-7■□□□□ 10.3
UPF1Q92900 OCLN-201ENST00000355237 6438 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.62e-7■□□□□ 10.3
UPF1Q92900 OCLN-205ENST00000538151 5391 ntTSL 1 (best) BASIC7.78□□□□□ -1.162e-7■□□□□ 10.3
UPF1Q92900 JADE1-211ENST00000512960 3000 ntAPPRIS P3 TSL 2 BASIC14.07□□□□□ -0.164e-9■□□□□ 10.3
UPF1Q92900 JADE1-209ENST00000511647 3560 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.394e-9■□□□□ 10.3
UPF1Q92900 JADE1-201ENST00000226319 5772 ntAPPRIS P3 TSL 5 BASIC12.47□□□□□ -0.414e-9■□□□□ 10.3
UPF1Q92900 JADE1-213ENST00000610919 5644 ntAPPRIS P3 TSL 5 BASIC11.31□□□□□ -0.64e-9■□□□□ 10.3
UPF1Q92900 JADE1-214ENST00000611140 5648 ntAPPRIS P3 TSL 5 BASIC10.56□□□□□ -0.724e-9■□□□□ 10.3
UPF1Q92900 JADE1-202ENST00000413543 4012 ntAPPRIS ALT2 TSL 1 (best) BASIC9.77□□□□□ -0.854e-9■□□□□ 10.3
UPF1Q92900 JADE1-203ENST00000452328 5544 ntAPPRIS ALT2 TSL 2 BASIC9.1□□□□□ -0.954e-9■□□□□ 10.3
UPF1Q92900 EPS8L2-228ENST00000534679 750 ntTSL 227.07■■□□□ 1.921e-8■□□□□ 10.3
UPF1Q92900 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC30.05■■■□□ 2.42e-9■□□□□ 10.3
UPF1Q92900 DSCR8-203ENST00000465532 791 ntTSL 216.01■□□□□ 0.151e-8■□□□□ 10.3
UPF1Q92900 DSCR8-206ENST00000478613 716 ntTSL 212.53□□□□□ -0.41e-8■□□□□ 10.3
UPF1Q92900 DSCR8-205ENST00000472602 766 ntTSL 310.45□□□□□ -0.741e-8■□□□□ 10.3
UPF1Q92900 DSCR8-207ENST00000495344 606 ntTSL 210.12□□□□□ -0.791e-8■□□□□ 10.3
UPF1Q92900 DSCR8-204ENST00000469658 437 ntTSL 29.98□□□□□ -0.811e-8■□□□□ 10.3
UPF1Q92900 DSCR8-201ENST00000357704 552 ntAPPRIS P5 TSL 2 BASIC7.36□□□□□ -1.231e-8■□□□□ 10.3
UPF1Q92900 DSCR8-202ENST00000400477 534 ntAPPRIS ALT2 TSL 1 (best) BASIC7.36□□□□□ -1.231e-8■□□□□ 10.3
UPF1Q92900 DSCR8-208ENST00000614538 403 ntAPPRIS P5 TSL 5 BASIC5.79□□□□□ -1.481e-8■□□□□ 10.3
UPF1Q92900 ISYNA1-213ENST00000583534 629 ntTSL 1 (best)29.22■■■□□ 2.276e-8■□□□□ 10.3
UPF1Q92900 ISYNA1-205ENST00000578352 592 ntTSL 227.86■■■□□ 2.056e-8■□□□□ 10.3
UPF1Q92900 ISYNA1-204ENST00000577916 2148 ntTSL 526.24■■□□□ 1.796e-8■□□□□ 10.3
UPF1Q92900 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.376e-8■□□□□ 10.3
UPF1Q92900 ISYNA1-208ENST00000581800 627 ntTSL 423.44■■□□□ 1.346e-8■□□□□ 10.3
UPF1Q92900 ISYNA1-210ENST00000582770 1654 ntTSL 222.23■■□□□ 1.156e-8■□□□□ 10.3
UPF1Q92900 ISYNA1-211ENST00000582811 2039 ntTSL 222.09■■□□□ 1.136e-8■□□□□ 10.3
UPF1Q92900 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC21.24■□□□□ 0.996e-8■□□□□ 10.3
UPF1Q92900 ISYNA1-203ENST00000577820 1466 ntTSL 518.97■□□□□ 0.636e-8■□□□□ 10.3
UPF1Q92900 RPL22-207ENST00000484532 449 ntTSL 2 BASIC12.72□□□□□ -0.372e-9■□□□□ 10.3
UPF1Q92900 RPL22-201ENST00000234875 2078 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.412e-9■□□□□ 10.3
UPF1Q92900 TMEM30A-202ENST00000370050 3775 ntTSL 1 (best) BASIC5.28□□□□□ -1.568e-7■□□□□ 10.3
UPF1Q92900 PIM2-201ENST00000376509 2075 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.023e-12■□□□□ 10.3
UPF1Q92900 GHITM-201ENST00000372134 2128 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.242e-22■□□□□ 10.3
UPF1Q92900 GABARAPL1-211ENST00000542722 1423 ntTSL 523.92■■□□□ 1.427e-7■□□□□ 10.3
UPF1Q92900 RAB21-201ENST00000261263 15546 ntAPPRIS P1 TSL 1 (best) BASIC9.1□□□□□ -0.957e-7■□□□□ 10.3
UPF1Q92900 CROCCP2-201ENST00000362058 2029 ntTSL 224.79■■□□□ 1.563e-15■□□□□ 10.3
UPF1Q92900 CROCCP2-203ENST00000635081 1904 ntTSL 522.68■■□□□ 1.223e-15■□□□□ 10.3
UPF1Q92900 CROCCP2-202ENST00000412962 2773 ntBASIC19.13■□□□□ 0.653e-15■□□□□ 10.3
UPF1Q92900 CROCCP2-204ENST00000639456 2575 ntTSL 517.99■□□□□ 0.473e-15■□□□□ 10.3
UPF1Q92900 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC20.55■□□□□ 0.885e-7■□□□□ 10.3
UPF1Q92900 EPN1-203ENST00000411543 2621 ntTSL 1 (best) BASIC16.7■□□□□ 0.265e-7■□□□□ 10.3
UPF1Q92900 EPN1-202ENST00000270460 16219 ntAPPRIS P1 TSL 2 BASIC9.19□□□□□ -0.945e-7■□□□□ 10.3
UPF1Q92900 CCNI-205ENST00000507788 595 ntTSL 423.74■■□□□ 1.394e-11■□□□□ 10.3
UPF1Q92900 SRSF10-211ENST00000484146 1089 ntTSL 2 BASIC21.1■□□□□ 0.971e-7■□□□□ 10.3
UPF1Q92900 SRSF10-205ENST00000374452 1194 ntTSL 1 (best) BASIC18.08■□□□□ 0.481e-7■□□□□ 10.3
UPF1Q92900 SRSF10-206ENST00000374453 866 ntTSL 5 BASIC14.79□□□□□ -0.041e-7■□□□□ 10.3
UPF1Q92900 SRSF10-210ENST00000473858 778 ntTSL 213.89□□□□□ -0.191e-7■□□□□ 10.3
UPF1Q92900 SRSF10-203ENST00000343255 2917 ntAPPRIS ALT1 TSL 2 BASIC13.44□□□□□ -0.261e-7■□□□□ 10.3
UPF1Q92900 RPS6KB1-202ENST00000393021 5479 ntTSL 2 BASIC13.37□□□□□ -0.271e-7■□□□□ 10.3
UPF1Q92900 SRSF10-214ENST00000492112 1631 ntAPPRIS P3 TSL 1 (best) BASIC12.66□□□□□ -0.381e-7■□□□□ 10.3
UPF1Q92900 SRSF10-202ENST00000341154 2839 ntTSL 211.93□□□□□ -0.51e-7■□□□□ 10.3
UPF1Q92900 SRSF10-207ENST00000453840 1808 ntTSL 1 (best) BASIC11.1□□□□□ -0.631e-7■□□□□ 10.3
UPF1Q92900 RPS6KB1-201ENST00000225577 5375 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.641e-7■□□□□ 10.3
UPF1Q92900 RPS6KB1-209ENST00000587061 564 ntTSL 310.22□□□□□ -0.771e-7■□□□□ 10.3
UPF1Q92900 SRSF10-204ENST00000344989 3487 ntTSL 1 (best) BASIC9.25□□□□□ -0.931e-7■□□□□ 10.3
UPF1Q92900 AC005702.2-201ENST00000591035 481 ntAPPRIS P1 TSL 3 BASIC8.38□□□□□ -1.071e-7■□□□□ 10.3
UPF1Q92900 SRSF10-213ENST00000485841 3957 ntTSL 28.12□□□□□ -1.111e-7■□□□□ 10.3
UPF1Q92900 CNOT1-207ENST00000565605 739 ntTSL 414.27□□□□□ -0.137e-7■□□□□ 10.3
UPF1Q92900 CNOT1-223ENST00000628857 291 ntTSL 5 BASIC7.72□□□□□ -1.177e-7■□□□□ 10.3
UPF1Q92900 CNOT1-216ENST00000569240 7660 ntAPPRIS ALT1 TSL 1 (best) BASIC6.94□□□□□ -1.37e-7■□□□□ 10.3
UPF1Q92900 CNOT1-211ENST00000567188 7830 ntTSL 1 (best)6.63□□□□□ -1.357e-7■□□□□ 10.3
UPF1Q92900 CNOT1-202ENST00000441024 4999 ntTSL 1 (best) BASIC6.39□□□□□ -1.397e-7■□□□□ 10.3
UPF1Q92900 CNOT1-201ENST00000317147 8471 ntAPPRIS P3 TSL 1 (best) BASIC4.33□□□□□ -1.727e-7■□□□□ 10.3
UPF1Q92900 PHLDB1-227ENST00000620788 5898 ntTSL 210.75□□□□□ -0.694e-9■□□□□ 10.2
UPF1Q92900 AP2B1-211ENST00000610402 3204 ntAPPRIS P1 TSL 1 (best) BASIC8.55□□□□□ -1.043e-11■□□□□ 10.2
UPF1Q92900 SLC36A1-201ENST00000243389 5781 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.392e-6■□□□□ 10.2
UPF1Q92900 PHF12-212ENST00000583524 1875 ntTSL 1 (best)31.45■■■□□ 2.632e-6■□□□□ 10.2
UPF1Q92900 PHF12-213ENST00000583747 648 ntTSL 329.33■■■□□ 2.292e-6■□□□□ 10.2
UPF1Q92900 PHF12-211ENST00000582853 555 ntTSL 429.06■■■□□ 2.242e-6■□□□□ 10.2
UPF1Q92900 PSTPIP2-203ENST00000588801 1023 ntTSL 525.44■■□□□ 1.663e-7■□□□□ 10.2
UPF1Q92900 PHF12-203ENST00000378879 2963 ntTSL 519.32■□□□□ 0.682e-6■□□□□ 10.2
UPF1Q92900 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC19.32■□□□□ 0.682e-6■□□□□ 10.2
UPF1Q92900 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC18.85■□□□□ 0.612e-6■□□□□ 10.2
UPF1Q92900 PHF12-205ENST00000577226 7679 ntTSL 1 (best) BASIC17.08■□□□□ 0.332e-6■□□□□ 10.2
UPF1Q92900 PHF12-214ENST00000584236 555 ntTSL 416.52■□□□□ 0.242e-6■□□□□ 10.2
UPF1Q92900 PHF12-215ENST00000584685 649 ntTSL 414.82□□□□□ -0.042e-6■□□□□ 10.2
UPF1Q92900 PHF12-204ENST00000483934 751 ntTSL 511.07□□□□□ -0.642e-6■□□□□ 10.2
UPF1Q92900 PHF12-209ENST00000582436 5697 ntTSL 58.09□□□□□ -1.122e-6■□□□□ 10.2
UPF1Q92900 RBM33-203ENST00000341148 7058 ntAPPRIS ALT2 TSL 1 (best) BASIC12.23□□□□□ -0.453e-11■□□□□ 10.2
UPF1Q92900 RBM33-207ENST00000401878 10149 ntAPPRIS P2 TSL 5 BASIC11.46□□□□□ -0.583e-11■□□□□ 10.2
UPF1Q92900 CMTM4-202ENST00000394106 1187 ntAPPRIS P1 TSL 1 (best) BASIC43.25■■■■■ 4.518e-7■□□□□ 10.2
UPF1Q92900 NR2F6-202ENST00000596878 731 ntTSL 334.58■■■■□ 3.138e-7■□□□□ 10.2
UPF1Q92900 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC29.8■■■□□ 2.365e-21■□□□□ 10.2
UPF1Q92900 TSN-208ENST00000490104 2717 ntTSL 216.98■□□□□ 0.318e-7■□□□□ 10.2
UPF1Q92900 TSN-204ENST00000467324 2843 ntTSL 515.53■□□□□ 0.088e-7■□□□□ 10.2
UPF1Q92900 TSN-212ENST00000536142 3328 ntTSL 2 BASIC13.63□□□□□ -0.238e-7■□□□□ 10.2
UPF1Q92900 TSN-201ENST00000389682 3420 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.398e-7■□□□□ 10.2
UPF1Q92900 ASAH1-231ENST00000636577 2129 ntTSL 5 BASIC20.29■□□□□ 0.841e-6■□□□□ 10.2
UPF1Q92900 ASAH1-233ENST00000636701 2158 ntTSL 519.7■□□□□ 0.741e-6■□□□□ 10.2
UPF1Q92900 ASAH1-243ENST00000637095 2048 ntTSL 519.2■□□□□ 0.661e-6■□□□□ 10.2
UPF1Q92900 ASAH1-223ENST00000636171 2283 ntTSL 5 BASIC18.16■□□□□ 0.51e-6■□□□□ 10.2
UPF1Q92900 ASAH1-201ENST00000262097 2618 ntAPPRIS P2 TSL 1 (best) BASIC16.86■□□□□ 0.291e-6■□□□□ 10.2
Retrieved 100 of 15,879 protein–RNA pairs in 75.8 ms