Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
DEPDC4Q8N2C3 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
DEPDC4Q8N2C3 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
DEPDC4Q8N2C3 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
DEPDC4Q8N2C3 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
DEPDC4Q8N2C3 DAP-202ENST00000432074 1048 ntTSL 2 BASIC16.2■□□□□ 0.18
DEPDC4Q8N2C3 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
DEPDC4Q8N2C3 DDX43P3-201ENST00000441064 443 ntBASIC16.2■□□□□ 0.18
DEPDC4Q8N2C3 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
DEPDC4Q8N2C3 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC16.2■□□□□ 0.18
DEPDC4Q8N2C3 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
DEPDC4Q8N2C3 AL671277.2-201ENST00000458060 996 ntBASIC16.2■□□□□ 0.18
DEPDC4Q8N2C3 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
DEPDC4Q8N2C3 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC16.2■□□□□ 0.18
DEPDC4Q8N2C3 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC16.2■□□□□ 0.18
DEPDC4Q8N2C3 GCSHP2-201ENST00000560971 527 ntBASIC16.2■□□□□ 0.18
DEPDC4Q8N2C3 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC16.2■□□□□ 0.18
DEPDC4Q8N2C3 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
DEPDC4Q8N2C3 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC16.2■□□□□ 0.18
DEPDC4Q8N2C3 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
DEPDC4Q8N2C3 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC16.2■□□□□ 0.18
DEPDC4Q8N2C3 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
DEPDC4Q8N2C3 TSHZ1-204ENST00000580243 3582 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
DEPDC4Q8N2C3 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC16.2■□□□□ 0.18
DEPDC4Q8N2C3 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
DEPDC4Q8N2C3 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
DEPDC4Q8N2C3 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
DEPDC4Q8N2C3 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
DEPDC4Q8N2C3 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC16.2■□□□□ 0.18
DEPDC4Q8N2C3 GLDC-201ENST00000321612 3900 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
DEPDC4Q8N2C3 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC16.19■□□□□ 0.18
DEPDC4Q8N2C3 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
DEPDC4Q8N2C3 SLC30A1-201ENST00000367001 5474 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
DEPDC4Q8N2C3 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC16.19■□□□□ 0.18
DEPDC4Q8N2C3 HYAL3-201ENST00000336307 1942 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
DEPDC4Q8N2C3 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC16.19■□□□□ 0.18
DEPDC4Q8N2C3 REXO1L11P-201ENST00000620964 1927 ntBASIC16.19■□□□□ 0.18
DEPDC4Q8N2C3 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
DEPDC4Q8N2C3 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
DEPDC4Q8N2C3 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
DEPDC4Q8N2C3 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
DEPDC4Q8N2C3 RUNX1-201ENST00000300305 6222 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
DEPDC4Q8N2C3 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC16.19■□□□□ 0.18
DEPDC4Q8N2C3 SLC25A35-202ENST00000577745 1860 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
DEPDC4Q8N2C3 OVCH1-AS1-204ENST00000641955 5529 ntBASIC16.19■□□□□ 0.18
DEPDC4Q8N2C3 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
DEPDC4Q8N2C3 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
DEPDC4Q8N2C3 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
DEPDC4Q8N2C3 ILF2-202ENST00000368681 726 ntTSL 2 BASIC16.19■□□□□ 0.18
DEPDC4Q8N2C3 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC16.19■□□□□ 0.18
DEPDC4Q8N2C3 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC16.19■□□□□ 0.18
DEPDC4Q8N2C3 STARP1-201ENST00000397973 869 ntBASIC16.19■□□□□ 0.18
DEPDC4Q8N2C3 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
DEPDC4Q8N2C3 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
DEPDC4Q8N2C3 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
DEPDC4Q8N2C3 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC16.19■□□□□ 0.18
DEPDC4Q8N2C3 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
DEPDC4Q8N2C3 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC16.19■□□□□ 0.18
DEPDC4Q8N2C3 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC16.19■□□□□ 0.18
DEPDC4Q8N2C3 CD320-202ENST00000537716 1119 ntTSL 2 BASIC16.19■□□□□ 0.18
DEPDC4Q8N2C3 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
DEPDC4Q8N2C3 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC16.19■□□□□ 0.18
DEPDC4Q8N2C3 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC16.19■□□□□ 0.18
DEPDC4Q8N2C3 AL121956.5-201ENST00000625261 221 ntBASIC16.19■□□□□ 0.18
DEPDC4Q8N2C3 MYB-242ENST00000618728 3545 ntTSL 5 BASIC16.19■□□□□ 0.18
DEPDC4Q8N2C3 PSMD2-201ENST00000310118 3449 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
DEPDC4Q8N2C3 TIGD2-202ENST00000603357 3217 ntAPPRIS P1 TSL 4 BASIC16.19■□□□□ 0.18
DEPDC4Q8N2C3 AP2A2-201ENST00000332231 4656 ntAPPRIS ALT1 TSL 1 (best) BASIC16.19■□□□□ 0.18
DEPDC4Q8N2C3 ZNF18-204ENST00000580306 2330 ntAPPRIS P3 TSL 2 BASIC16.19■□□□□ 0.18
DEPDC4Q8N2C3 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC16.19■□□□□ 0.18
DEPDC4Q8N2C3 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
DEPDC4Q8N2C3 PLIN1-201ENST00000300055 2953 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
DEPDC4Q8N2C3 KIAA1217-206ENST00000376462 6123 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
DEPDC4Q8N2C3 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
DEPDC4Q8N2C3 PCDH8P1-201ENST00000428983 2773 ntBASIC16.19■□□□□ 0.18
DEPDC4Q8N2C3 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
DEPDC4Q8N2C3 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
DEPDC4Q8N2C3 ARMC5-203ENST00000457010 4844 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
DEPDC4Q8N2C3 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC16.19■□□□□ 0.18
DEPDC4Q8N2C3 EIF4G1-204ENST00000352767 5484 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
DEPDC4Q8N2C3 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
DEPDC4Q8N2C3 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
DEPDC4Q8N2C3 KHNYN-202ENST00000553935 3359 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
DEPDC4Q8N2C3 RGP1-201ENST00000378078 7018 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
DEPDC4Q8N2C3 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
DEPDC4Q8N2C3 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC16.18■□□□□ 0.18
DEPDC4Q8N2C3 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
DEPDC4Q8N2C3 H6PD-201ENST00000377403 9146 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
DEPDC4Q8N2C3 RIMS1-210ENST00000491071 5047 ntTSL 5 BASIC16.18■□□□□ 0.18
DEPDC4Q8N2C3 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC16.18■□□□□ 0.18
DEPDC4Q8N2C3 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
DEPDC4Q8N2C3 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC16.18■□□□□ 0.18
DEPDC4Q8N2C3 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
DEPDC4Q8N2C3 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC16.18■□□□□ 0.18
DEPDC4Q8N2C3 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC16.18■□□□□ 0.18
DEPDC4Q8N2C3 HMGXB3-202ENST00000503427 5275 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
DEPDC4Q8N2C3 NIPA2-204ENST00000398014 3130 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
DEPDC4Q8N2C3 FBXO46-201ENST00000317683 3001 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
DEPDC4Q8N2C3 LRRC59-201ENST00000225972 2910 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
DEPDC4Q8N2C3 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 64.5 ms