Protein–RNA interactions for Protein: Q8N1M1

BEST3, Bestrophin-3, humanhuman

Predictions only

Length 668 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BEST3Q8N1M1 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
BEST3Q8N1M1 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC16.13■□□□□ 0.17
BEST3Q8N1M1 KRT18P27-201ENST00000427733 1299 ntBASIC16.13■□□□□ 0.17
BEST3Q8N1M1 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC16.13■□□□□ 0.17
BEST3Q8N1M1 UNC93B6-202ENST00000528242 690 ntBASIC16.13■□□□□ 0.17
BEST3Q8N1M1 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC16.13■□□□□ 0.17
BEST3Q8N1M1 MNT-208ENST00000575394 606 ntTSL 4 BASIC16.13■□□□□ 0.17
BEST3Q8N1M1 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
BEST3Q8N1M1 AL589182.2-201ENST00000619332 1049 ntBASIC16.13■□□□□ 0.17
BEST3Q8N1M1 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC16.13■□□□□ 0.17
BEST3Q8N1M1 RIF1-204ENST00000430328 7992 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
BEST3Q8N1M1 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
BEST3Q8N1M1 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
BEST3Q8N1M1 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC16.13■□□□□ 0.17
BEST3Q8N1M1 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
BEST3Q8N1M1 PMS2P7-201ENST00000506558 1336 ntBASIC16.13■□□□□ 0.17
BEST3Q8N1M1 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
BEST3Q8N1M1 ZFP91-201ENST00000316059 5220 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
BEST3Q8N1M1 METTL21A-203ENST00000411432 4805 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
BEST3Q8N1M1 ZBTB4-202ENST00000380599 5866 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
BEST3Q8N1M1 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
BEST3Q8N1M1 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC16.13■□□□□ 0.17
BEST3Q8N1M1 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
BEST3Q8N1M1 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
BEST3Q8N1M1 KCTD20-202ENST00000373731 5619 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
BEST3Q8N1M1 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
BEST3Q8N1M1 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
BEST3Q8N1M1 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC16.12■□□□□ 0.17
BEST3Q8N1M1 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
BEST3Q8N1M1 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC16.12■□□□□ 0.17
BEST3Q8N1M1 GABRB3-202ENST00000311550 5781 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
BEST3Q8N1M1 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
BEST3Q8N1M1 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC16.12■□□□□ 0.17
BEST3Q8N1M1 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
BEST3Q8N1M1 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC16.12■□□□□ 0.17
BEST3Q8N1M1 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC16.12■□□□□ 0.17
BEST3Q8N1M1 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
BEST3Q8N1M1 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
BEST3Q8N1M1 PRORSD1P-202ENST00000563365 2154 ntBASIC16.12■□□□□ 0.17
BEST3Q8N1M1 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
BEST3Q8N1M1 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
BEST3Q8N1M1 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
BEST3Q8N1M1 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC16.12■□□□□ 0.17
BEST3Q8N1M1 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC16.12■□□□□ 0.17
BEST3Q8N1M1 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
BEST3Q8N1M1 FABP5-202ENST00000396359 986 ntTSL 5 BASIC16.12■□□□□ 0.17
BEST3Q8N1M1 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC16.12■□□□□ 0.17
BEST3Q8N1M1 MED15P5-201ENST00000423150 992 ntBASIC16.12■□□□□ 0.17
BEST3Q8N1M1 RPP21-221ENST00000428040 594 ntTSL 2 BASIC16.12■□□□□ 0.17
BEST3Q8N1M1 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC16.12■□□□□ 0.17
BEST3Q8N1M1 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC16.12■□□□□ 0.17
BEST3Q8N1M1 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
BEST3Q8N1M1 SIGLEC30P-201ENST00000455569 941 ntBASIC16.12■□□□□ 0.17
BEST3Q8N1M1 STK19B-204ENST00000512515 211 ntBASIC16.12■□□□□ 0.17
BEST3Q8N1M1 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC16.12■□□□□ 0.17
BEST3Q8N1M1 AC027601.4-201ENST00000611259 610 ntBASIC16.12■□□□□ 0.17
BEST3Q8N1M1 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC16.12■□□□□ 0.17
BEST3Q8N1M1 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
BEST3Q8N1M1 COBL-201ENST00000265136 5291 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
BEST3Q8N1M1 BRD2-201ENST00000374825 4894 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
BEST3Q8N1M1 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
BEST3Q8N1M1 AC106820.2-201ENST00000563775 3264 ntBASIC16.12■□□□□ 0.17
BEST3Q8N1M1 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
BEST3Q8N1M1 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
BEST3Q8N1M1 AC138028.4-201ENST00000564984 1845 ntBASIC16.12■□□□□ 0.17
BEST3Q8N1M1 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
BEST3Q8N1M1 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
BEST3Q8N1M1 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
BEST3Q8N1M1 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC16.12■□□□□ 0.17
BEST3Q8N1M1 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
BEST3Q8N1M1 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC16.12■□□□□ 0.17
BEST3Q8N1M1 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC16.11■□□□□ 0.17
BEST3Q8N1M1 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC16.11■□□□□ 0.17
BEST3Q8N1M1 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC16.11■□□□□ 0.17
BEST3Q8N1M1 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC16.11■□□□□ 0.17
BEST3Q8N1M1 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
BEST3Q8N1M1 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
BEST3Q8N1M1 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC16.11■□□□□ 0.17
BEST3Q8N1M1 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC16.11■□□□□ 0.17
BEST3Q8N1M1 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
BEST3Q8N1M1 S100A2-206ENST00000497140 697 ntTSL 2 BASIC16.11■□□□□ 0.17
BEST3Q8N1M1 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC16.11■□□□□ 0.17
BEST3Q8N1M1 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC16.11■□□□□ 0.17
BEST3Q8N1M1 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC16.11■□□□□ 0.17
BEST3Q8N1M1 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC16.11■□□□□ 0.17
BEST3Q8N1M1 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC16.11■□□□□ 0.17
BEST3Q8N1M1 STK25P1-201ENST00000585406 838 ntBASIC16.11■□□□□ 0.17
BEST3Q8N1M1 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC16.11■□□□□ 0.17
BEST3Q8N1M1 AC140113.2-201ENST00000604370 208 ntBASIC16.11■□□□□ 0.17
BEST3Q8N1M1 GPALPP1-207ENST00000611650 899 ntBASIC16.11■□□□□ 0.17
BEST3Q8N1M1 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
BEST3Q8N1M1 AC005593.1-201ENST00000624894 515 ntBASIC16.11■□□□□ 0.17
BEST3Q8N1M1 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC16.11■□□□□ 0.17
BEST3Q8N1M1 RAB22A-201ENST00000244040 8670 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
BEST3Q8N1M1 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC16.11■□□□□ 0.17
BEST3Q8N1M1 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
BEST3Q8N1M1 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
BEST3Q8N1M1 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC16.11■□□□□ 0.17
BEST3Q8N1M1 BEND4-201ENST00000502486 8765 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
BEST3Q8N1M1 BMPER-201ENST00000297161 5031 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 41.6 ms