Protein–RNA interactions for Protein: Q6NUP7

PPP4R4, Serine/threonine-protein phosphatase 4 regulatory subunit 4, humanhuman

Predictions only

Length 873 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PPP4R4Q6NUP7 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
PPP4R4Q6NUP7 VSX2-201ENST00000261980 2995 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
PPP4R4Q6NUP7 UBL5-201ENST00000358666 513 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
PPP4R4Q6NUP7 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
PPP4R4Q6NUP7 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
PPP4R4Q6NUP7 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
PPP4R4Q6NUP7 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
PPP4R4Q6NUP7 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
PPP4R4Q6NUP7 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
PPP4R4Q6NUP7 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC16.68■□□□□ 0.26
PPP4R4Q6NUP7 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
PPP4R4Q6NUP7 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
PPP4R4Q6NUP7 DAGLB-202ENST00000425398 2044 ntTSL 2 BASIC16.68■□□□□ 0.26
PPP4R4Q6NUP7 AC060834.1-201ENST00000443027 2032 ntBASIC16.68■□□□□ 0.26
PPP4R4Q6NUP7 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC16.68■□□□□ 0.26
PPP4R4Q6NUP7 KRT15-201ENST00000254043 5237 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
PPP4R4Q6NUP7 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC16.68■□□□□ 0.26
PPP4R4Q6NUP7 ZFP90-203ENST00000563169 2512 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
PPP4R4Q6NUP7 SLIT1-204ENST00000371070 4564 ntTSL 5 BASIC16.68■□□□□ 0.26
PPP4R4Q6NUP7 MYEF2-215ENST00000610570 2591 ntTSL 5 BASIC16.68■□□□□ 0.26
PPP4R4Q6NUP7 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
PPP4R4Q6NUP7 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC16.68■□□□□ 0.26
PPP4R4Q6NUP7 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
PPP4R4Q6NUP7 PCDHA13-202ENST00000409494 4884 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
PPP4R4Q6NUP7 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC16.68■□□□□ 0.26
PPP4R4Q6NUP7 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
PPP4R4Q6NUP7 SCN3B-202ENST00000392770 6061 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
PPP4R4Q6NUP7 ZNF423-206ENST00000563137 4911 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
PPP4R4Q6NUP7 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
PPP4R4Q6NUP7 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC16.67■□□□□ 0.26
PPP4R4Q6NUP7 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC16.67■□□□□ 0.26
PPP4R4Q6NUP7 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
PPP4R4Q6NUP7 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
PPP4R4Q6NUP7 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC16.67■□□□□ 0.26
PPP4R4Q6NUP7 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC16.67■□□□□ 0.26
PPP4R4Q6NUP7 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
PPP4R4Q6NUP7 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
PPP4R4Q6NUP7 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
PPP4R4Q6NUP7 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
PPP4R4Q6NUP7 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC16.67■□□□□ 0.26
PPP4R4Q6NUP7 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC16.67■□□□□ 0.26
PPP4R4Q6NUP7 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC16.67■□□□□ 0.26
PPP4R4Q6NUP7 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC16.67■□□□□ 0.26
PPP4R4Q6NUP7 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC16.67■□□□□ 0.26
PPP4R4Q6NUP7 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
PPP4R4Q6NUP7 AC063952.2-201ENST00000498792 1227 ntBASIC16.67■□□□□ 0.26
PPP4R4Q6NUP7 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC16.67■□□□□ 0.26
PPP4R4Q6NUP7 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC16.67■□□□□ 0.26
PPP4R4Q6NUP7 LETM2-205ENST00000519476 2240 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
PPP4R4Q6NUP7 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
PPP4R4Q6NUP7 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC16.67■□□□□ 0.26
PPP4R4Q6NUP7 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC16.67■□□□□ 0.26
PPP4R4Q6NUP7 HS2ST1-201ENST00000370550 6736 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
PPP4R4Q6NUP7 NEO1-206ENST00000558964 4441 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
PPP4R4Q6NUP7 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
PPP4R4Q6NUP7 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
PPP4R4Q6NUP7 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
PPP4R4Q6NUP7 MAPT-204ENST00000344290 6816 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
PPP4R4Q6NUP7 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC16.67■□□□□ 0.26
PPP4R4Q6NUP7 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
PPP4R4Q6NUP7 PRMT6-201ENST00000370078 2616 ntAPPRIS P1 BASIC16.66■□□□□ 0.26
PPP4R4Q6NUP7 NTRK2-205ENST00000376208 8178 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
PPP4R4Q6NUP7 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC16.66■□□□□ 0.26
PPP4R4Q6NUP7 SETD1B-201ENST00000267197 5772 ntAPPRIS ALT2 TSL 5 BASIC16.66■□□□□ 0.26
PPP4R4Q6NUP7 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
PPP4R4Q6NUP7 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
PPP4R4Q6NUP7 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
PPP4R4Q6NUP7 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC16.66■□□□□ 0.26
PPP4R4Q6NUP7 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC16.66■□□□□ 0.26
PPP4R4Q6NUP7 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC16.66■□□□□ 0.26
PPP4R4Q6NUP7 FRS2-206ENST00000549921 1952 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
PPP4R4Q6NUP7 ANOS1-201ENST00000262648 6314 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
PPP4R4Q6NUP7 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
PPP4R4Q6NUP7 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
PPP4R4Q6NUP7 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC16.66■□□□□ 0.26
PPP4R4Q6NUP7 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC16.66■□□□□ 0.26
PPP4R4Q6NUP7 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
PPP4R4Q6NUP7 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC16.66■□□□□ 0.26
PPP4R4Q6NUP7 HOMER2P1-201ENST00000455653 964 ntBASIC16.66■□□□□ 0.26
PPP4R4Q6NUP7 AC034232.1-201ENST00000506026 1064 ntBASIC16.66■□□□□ 0.26
PPP4R4Q6NUP7 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC16.66■□□□□ 0.26
PPP4R4Q6NUP7 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC16.66■□□□□ 0.26
PPP4R4Q6NUP7 NT5C-211ENST00000582170 653 ntTSL 3 BASIC16.66■□□□□ 0.26
PPP4R4Q6NUP7 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC16.66■□□□□ 0.26
PPP4R4Q6NUP7 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC16.66■□□□□ 0.26
PPP4R4Q6NUP7 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC16.66■□□□□ 0.26
PPP4R4Q6NUP7 LINC01451-201ENST00000623792 534 ntBASIC16.66■□□□□ 0.26
PPP4R4Q6NUP7 SRSF12-201ENST00000452027 3599 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
PPP4R4Q6NUP7 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC16.66■□□□□ 0.26
PPP4R4Q6NUP7 DNAJC10-210ENST00000616986 5783 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
PPP4R4Q6NUP7 AC091980.2-201ENST00000619056 2775 ntAPPRIS P1 BASIC16.66■□□□□ 0.26
PPP4R4Q6NUP7 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
PPP4R4Q6NUP7 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC16.65■□□□□ 0.26
PPP4R4Q6NUP7 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
PPP4R4Q6NUP7 NFATC4-211ENST00000554344 2955 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
PPP4R4Q6NUP7 COL2A1-202ENST00000380518 5071 ntAPPRIS ALT1 TSL 1 (best) BASIC16.65■□□□□ 0.26
PPP4R4Q6NUP7 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
PPP4R4Q6NUP7 F11R-206ENST00000621309 4770 ntTSL 5 BASIC16.65■□□□□ 0.26
PPP4R4Q6NUP7 CPEB2-201ENST00000259997 5612 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
PPP4R4Q6NUP7 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 42.3 ms