Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC16.98■□□□□ 0.31
PTCHD3Q3KNS1 TP73-AS1-207ENST00000624167 988 ntBASIC16.98■□□□□ 0.31
PTCHD3Q3KNS1 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC16.98■□□□□ 0.31
PTCHD3Q3KNS1 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
PTCHD3Q3KNS1 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC16.98■□□□□ 0.31
PTCHD3Q3KNS1 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC16.98■□□□□ 0.31
PTCHD3Q3KNS1 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
PTCHD3Q3KNS1 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
PTCHD3Q3KNS1 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
PTCHD3Q3KNS1 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
PTCHD3Q3KNS1 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC16.98■□□□□ 0.31
PTCHD3Q3KNS1 KMT5A-202ENST00000402868 3140 ntAPPRIS P2 TSL 1 (best) BASIC16.98■□□□□ 0.31
PTCHD3Q3KNS1 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC16.98■□□□□ 0.31
PTCHD3Q3KNS1 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
PTCHD3Q3KNS1 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
PTCHD3Q3KNS1 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
PTCHD3Q3KNS1 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC16.97■□□□□ 0.31
PTCHD3Q3KNS1 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC16.97■□□□□ 0.31
PTCHD3Q3KNS1 ENPP1-201ENST00000360971 7442 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
PTCHD3Q3KNS1 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
PTCHD3Q3KNS1 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
PTCHD3Q3KNS1 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
PTCHD3Q3KNS1 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC16.97■□□□□ 0.31
PTCHD3Q3KNS1 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC16.97■□□□□ 0.31
PTCHD3Q3KNS1 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC16.97■□□□□ 0.31
PTCHD3Q3KNS1 AC080080.1-201ENST00000625121 2420 ntBASIC16.97■□□□□ 0.31
PTCHD3Q3KNS1 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
PTCHD3Q3KNS1 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
PTCHD3Q3KNS1 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC16.97■□□□□ 0.31
PTCHD3Q3KNS1 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
PTCHD3Q3KNS1 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
PTCHD3Q3KNS1 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
PTCHD3Q3KNS1 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC16.97■□□□□ 0.31
PTCHD3Q3KNS1 CTNS-203ENST00000399306 803 ntTSL 3 BASIC16.97■□□□□ 0.31
PTCHD3Q3KNS1 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC16.97■□□□□ 0.31
PTCHD3Q3KNS1 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC16.97■□□□□ 0.31
PTCHD3Q3KNS1 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC16.97■□□□□ 0.31
PTCHD3Q3KNS1 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC16.97■□□□□ 0.31
PTCHD3Q3KNS1 STK25P1-201ENST00000585406 838 ntBASIC16.97■□□□□ 0.31
PTCHD3Q3KNS1 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC16.97■□□□□ 0.31
PTCHD3Q3KNS1 VPS51-217ENST00000639871 243 ntTSL 5 BASIC16.97■□□□□ 0.31
PTCHD3Q3KNS1 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC16.97■□□□□ 0.31
PTCHD3Q3KNS1 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC16.97■□□□□ 0.31
PTCHD3Q3KNS1 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
PTCHD3Q3KNS1 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
PTCHD3Q3KNS1 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC16.97■□□□□ 0.31
PTCHD3Q3KNS1 PTPRU-202ENST00000373779 5579 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
PTCHD3Q3KNS1 BCR-201ENST00000305877 7082 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
PTCHD3Q3KNS1 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
PTCHD3Q3KNS1 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC16.97■□□□□ 0.31
PTCHD3Q3KNS1 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
PTCHD3Q3KNS1 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC16.97■□□□□ 0.31
PTCHD3Q3KNS1 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC16.97■□□□□ 0.31
PTCHD3Q3KNS1 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
PTCHD3Q3KNS1 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC16.96■□□□□ 0.31
PTCHD3Q3KNS1 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC16.96■□□□□ 0.31
PTCHD3Q3KNS1 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC16.96■□□□□ 0.31
PTCHD3Q3KNS1 FUT8-AS1-201ENST00000621019 1521 ntBASIC16.96■□□□□ 0.31
PTCHD3Q3KNS1 AC046185.3-201ENST00000623228 1824 ntBASIC16.96■□□□□ 0.31
PTCHD3Q3KNS1 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
PTCHD3Q3KNS1 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC16.96■□□□□ 0.31
PTCHD3Q3KNS1 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
PTCHD3Q3KNS1 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
PTCHD3Q3KNS1 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
PTCHD3Q3KNS1 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
PTCHD3Q3KNS1 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC16.96■□□□□ 0.31
PTCHD3Q3KNS1 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
PTCHD3Q3KNS1 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC16.96■□□□□ 0.31
PTCHD3Q3KNS1 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC16.96■□□□□ 0.31
PTCHD3Q3KNS1 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
PTCHD3Q3KNS1 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC16.96■□□□□ 0.31
PTCHD3Q3KNS1 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.31
PTCHD3Q3KNS1 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
PTCHD3Q3KNS1 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
PTCHD3Q3KNS1 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
PTCHD3Q3KNS1 UBR3-203ENST00000418381 7951 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.31
PTCHD3Q3KNS1 POM121C-208ENST00000615331 5835 ntAPPRIS P2 TSL 1 (best) BASIC16.96■□□□□ 0.31
PTCHD3Q3KNS1 C18orf63-201ENST00000579455 5127 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
PTCHD3Q3KNS1 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
PTCHD3Q3KNS1 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
PTCHD3Q3KNS1 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC16.96■□□□□ 0.3
PTCHD3Q3KNS1 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC16.96■□□□□ 0.3
PTCHD3Q3KNS1 LCAT-201ENST00000264005 1507 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
PTCHD3Q3KNS1 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
PTCHD3Q3KNS1 ZBTB4-202ENST00000380599 5866 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
PTCHD3Q3KNS1 FBXO7-201ENST00000266087 2195 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
PTCHD3Q3KNS1 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
PTCHD3Q3KNS1 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
PTCHD3Q3KNS1 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC16.95■□□□□ 0.3
PTCHD3Q3KNS1 SNTB2-201ENST00000336278 9789 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
PTCHD3Q3KNS1 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC16.95■□□□□ 0.3
PTCHD3Q3KNS1 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
PTCHD3Q3KNS1 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC16.95■□□□□ 0.3
PTCHD3Q3KNS1 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC16.95■□□□□ 0.3
PTCHD3Q3KNS1 AP000347.1-202ENST00000435868 847 ntBASIC16.95■□□□□ 0.3
PTCHD3Q3KNS1 MOK-208ENST00000519058 917 ntTSL 2 BASIC16.95■□□□□ 0.3
PTCHD3Q3KNS1 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC16.95■□□□□ 0.3
PTCHD3Q3KNS1 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC16.95■□□□□ 0.3
PTCHD3Q3KNS1 AC008608.2-201ENST00000606089 416 ntBASIC16.95■□□□□ 0.3
PTCHD3Q3KNS1 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC16.95■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 40.3 ms