Protein–RNA interactions for Protein: P28702

RXRB, Retinoic acid receptor RXR-beta, humanhuman

Predictions only

Length 533 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RXRBP28702 AC106872.11-201ENST00000605838 421 ntBASIC22.43■■□□□ 1.18
RXRBP28702 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC22.43■■□□□ 1.18
RXRBP28702 USP39-202ENST00000409025 1946 ntTSL 5 BASIC22.43■■□□□ 1.18
RXRBP28702 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
RXRBP28702 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
RXRBP28702 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC22.42■■□□□ 1.18
RXRBP28702 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC22.42■■□□□ 1.18
RXRBP28702 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
RXRBP28702 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC22.42■■□□□ 1.18
RXRBP28702 MEIKIN-203ENST00000442687 1315 ntAPPRIS P2 TSL 1 (best) BASIC22.42■■□□□ 1.18
RXRBP28702 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
RXRBP28702 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
RXRBP28702 FLT3LG-201ENST00000204637 1046 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
RXRBP28702 SPATC1L-202ENST00000330205 1182 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
RXRBP28702 OR10H1-201ENST00000334920 1124 ntAPPRIS P1 BASIC22.42■■□□□ 1.18
RXRBP28702 FAM86HP-203ENST00000511564 521 ntTSL 2 BASIC22.42■■□□□ 1.18
RXRBP28702 AC013451.1-201ENST00000554552 518 ntTSL 4 BASIC22.42■■□□□ 1.18
RXRBP28702 AC027601.2-201ENST00000571085 805 ntTSL 5 BASIC22.42■■□□□ 1.18
RXRBP28702 HIST2H2AA4-201ENST00000607355 564 ntAPPRIS P1 BASIC22.42■■□□□ 1.18
RXRBP28702 TMEM14B-220ENST00000612333 888 ntTSL 3 BASIC22.42■■□□□ 1.18
RXRBP28702 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC22.42■■□□□ 1.18
RXRBP28702 NARF-206ENST00000457415 1668 ntTSL 5 BASIC22.42■■□□□ 1.18
RXRBP28702 AL135999.2-201ENST00000622438 1686 ntBASIC22.42■■□□□ 1.18
RXRBP28702 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
RXRBP28702 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC22.42■■□□□ 1.18
RXRBP28702 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
RXRBP28702 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC22.41■■□□□ 1.18
RXRBP28702 OTUB1-206ENST00000535715 1391 ntTSL 5 BASIC22.41■■□□□ 1.18
RXRBP28702 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC22.41■■□□□ 1.18
RXRBP28702 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC22.41■■□□□ 1.18
RXRBP28702 CTSW-201ENST00000307886 1300 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
RXRBP28702 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC22.41■■□□□ 1.18
RXRBP28702 TPM1-207ENST00000403994 1049 ntAPPRIS ALT1 TSL 1 (best) BASIC22.41■■□□□ 1.18
RXRBP28702 Z82214.2-201ENST00000420269 531 ntTSL 4 BASIC22.41■■□□□ 1.18
RXRBP28702 AP000345.1-201ENST00000454863 569 ntTSL 4 BASIC22.41■■□□□ 1.18
RXRBP28702 PLEKHB1-206ENST00000535129 1049 ntAPPRIS ALT1 TSL 2 BASIC22.41■■□□□ 1.18
RXRBP28702 AC009133.2-201ENST00000566537 547 ntTSL 4 BASIC22.41■■□□□ 1.18
RXRBP28702 LITAF-210ENST00000571976 548 ntTSL 2 BASIC22.41■■□□□ 1.18
RXRBP28702 LITAF-214ENST00000574703 486 ntTSL 2 BASIC22.41■■□□□ 1.18
RXRBP28702 AC015936.2-201ENST00000593177 259 ntBASIC22.41■■□□□ 1.18
RXRBP28702 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC22.41■■□□□ 1.18
RXRBP28702 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC22.41■■□□□ 1.18
RXRBP28702 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC22.41■■□□□ 1.18
RXRBP28702 AC016027.1-202ENST00000607927 1699 ntBASIC22.41■■□□□ 1.18
RXRBP28702 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
RXRBP28702 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
RXRBP28702 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC22.4■■□□□ 1.18
RXRBP28702 AC093525.8-201ENST00000624099 1342 ntBASIC22.4■■□□□ 1.18
RXRBP28702 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
RXRBP28702 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC22.4■■□□□ 1.18
RXRBP28702 PHLDA2-201ENST00000314222 955 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
RXRBP28702 MAGEA12-203ENST00000393900 1299 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
RXRBP28702 AL353705.2-201ENST00000428243 662 ntBASIC22.4■■□□□ 1.18
RXRBP28702 KRT43P-201ENST00000434019 910 ntBASIC22.4■■□□□ 1.18
RXRBP28702 ZNF707-203ENST00000442058 562 ntTSL 4 BASIC22.4■■□□□ 1.18
RXRBP28702 RN7SL828P-201ENST00000607615 303 ntBASIC22.4■■□□□ 1.18
RXRBP28702 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC22.4■■□□□ 1.18
RXRBP28702 STAC3-206ENST00000554578 1580 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
RXRBP28702 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC22.4■■□□□ 1.18
RXRBP28702 MUC1-228ENST00000620103 1811 ntAPPRIS ALT2 TSL 5 BASIC22.4■■□□□ 1.18
RXRBP28702 PHGDH-209ENST00000641074 1780 ntBASIC22.4■■□□□ 1.18
RXRBP28702 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC22.4■■□□□ 1.18
RXRBP28702 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC22.4■■□□□ 1.18
RXRBP28702 AL049812.1-201ENST00000432563 2267 ntBASIC22.4■■□□□ 1.18
RXRBP28702 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC22.39■■□□□ 1.18
RXRBP28702 LLGL2-209ENST00000578363 1393 ntTSL 1 (best) BASIC22.39■■□□□ 1.18
RXRBP28702 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.18
RXRBP28702 LINC01301-205ENST00000531654 1347 ntTSL 5 BASIC22.39■■□□□ 1.18
RXRBP28702 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC22.39■■□□□ 1.18
RXRBP28702 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC22.39■■□□□ 1.17
RXRBP28702 BOLA3-201ENST00000295326 444 ntTSL 1 (best) BASIC22.39■■□□□ 1.17
RXRBP28702 AL138767.1-201ENST00000354527 744 ntTSL 3 BASIC22.39■■□□□ 1.17
RXRBP28702 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC22.39■■□□□ 1.17
RXRBP28702 LMO4-201ENST00000370542 1260 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
RXRBP28702 MIR663B-201ENST00000408361 115 ntBASIC22.39■■□□□ 1.17
RXRBP28702 GPAA1P2-201ENST00000417923 928 ntBASIC22.39■■□□□ 1.17
RXRBP28702 BRF2-202ENST00000520601 1192 ntTSL 3 BASIC22.39■■□□□ 1.17
RXRBP28702 AC105233.2-201ENST00000523697 349 ntBASIC22.39■■□□□ 1.17
RXRBP28702 AF228730.5-201ENST00000530288 346 ntBASIC22.39■■□□□ 1.17
RXRBP28702 AC133550.2-201ENST00000567731 544 ntTSL 4 BASIC22.39■■□□□ 1.17
RXRBP28702 AC007333.1-201ENST00000568286 630 ntTSL 3 BASIC22.39■■□□□ 1.17
RXRBP28702 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
RXRBP28702 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC22.39■■□□□ 1.17
RXRBP28702 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
RXRBP28702 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
RXRBP28702 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC22.39■■□□□ 1.17
RXRBP28702 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC22.39■■□□□ 1.17
RXRBP28702 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC22.39■■□□□ 1.17
RXRBP28702 BRINP1-202ENST00000373964 1641 ntTSL 1 (best) BASIC22.39■■□□□ 1.17
RXRBP28702 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC22.38■■□□□ 1.17
RXRBP28702 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC22.38■■□□□ 1.17
RXRBP28702 EIF5A-206ENST00000571955 1366 ntAPPRIS P1 TSL 5 BASIC22.38■■□□□ 1.17
RXRBP28702 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
RXRBP28702 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
RXRBP28702 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
RXRBP28702 RNF34-202ENST00000392464 1722 ntTSL 5 BASIC22.38■■□□□ 1.17
RXRBP28702 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC22.38■■□□□ 1.17
RXRBP28702 VCX-201ENST00000341408 677 ntAPPRIS ALT2 TSL 5 BASIC22.38■■□□□ 1.17
RXRBP28702 MIR1247-201ENST00000408206 136 ntBASIC22.38■■□□□ 1.17
RXRBP28702 LINC01784-201ENST00000438401 378 ntTSL 2 BASIC22.38■■□□□ 1.17
Retrieved 100 of 98,524 protein–RNA pairs in 39 ms