Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 AC084121.4-201ENST00000641598 221 ntBASIC17.73■□□□□ 0.43
COL9A1P20849 AF228730.8-201ENST00000642140 221 ntBASIC17.73■□□□□ 0.43
COL9A1P20849 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC17.73■□□□□ 0.43
COL9A1P20849 FBXO22-202ENST00000453211 1486 ntTSL 2 BASIC17.73■□□□□ 0.43
COL9A1P20849 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC17.73■□□□□ 0.43
COL9A1P20849 POR-209ENST00000439269 1858 ntTSL 2 BASIC17.73■□□□□ 0.43
COL9A1P20849 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC17.73■□□□□ 0.43
COL9A1P20849 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
COL9A1P20849 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
COL9A1P20849 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
COL9A1P20849 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
COL9A1P20849 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
COL9A1P20849 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC17.72■□□□□ 0.43
COL9A1P20849 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
COL9A1P20849 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC17.72■□□□□ 0.43
COL9A1P20849 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC17.72■□□□□ 0.43
COL9A1P20849 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC17.72■□□□□ 0.43
COL9A1P20849 AC020907.1-201ENST00000616460 1350 ntBASIC17.72■□□□□ 0.43
COL9A1P20849 LST1-205ENST00000376089 680 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
COL9A1P20849 LST1-206ENST00000376090 689 ntTSL 2 BASIC17.72■□□□□ 0.43
COL9A1P20849 LST1-208ENST00000376093 648 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
COL9A1P20849 LST1-209ENST00000376096 565 ntTSL 2 BASIC17.72■□□□□ 0.43
COL9A1P20849 LST1-210ENST00000376099 610 ntTSL 2 BASIC17.72■□□□□ 0.43
COL9A1P20849 LST1-212ENST00000396101 459 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
COL9A1P20849 LST1-214ENST00000418507 726 ntTSL 2 BASIC17.72■□□□□ 0.43
COL9A1P20849 CC2D2B-203ENST00000423344 1241 ntTSL 2 BASIC17.72■□□□□ 0.43
COL9A1P20849 AC092580.3-201ENST00000430932 139 ntBASIC17.72■□□□□ 0.43
COL9A1P20849 AL355994.3-201ENST00000437156 466 ntTSL 2 BASIC17.72■□□□□ 0.43
COL9A1P20849 LST1-217ENST00000438075 764 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
COL9A1P20849 RN7SL752P-201ENST00000463779 287 ntBASIC17.72■□□□□ 0.43
COL9A1P20849 RNA5SP423-201ENST00000517127 109 ntBASIC17.72■□□□□ 0.43
COL9A1P20849 FAM86C2P-203ENST00000528684 1004 ntBASIC17.72■□□□□ 0.43
COL9A1P20849 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
COL9A1P20849 RIN3-211ENST00000557762 517 ntTSL 3 BASIC17.72■□□□□ 0.43
COL9A1P20849 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
COL9A1P20849 AURKB-214ENST00000585124 1227 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
COL9A1P20849 AC008736.2-201ENST00000587554 516 ntTSL 2 BASIC17.72■□□□□ 0.43
COL9A1P20849 TMEM205-208ENST00000587948 688 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
COL9A1P20849 TMEM205-211ENST00000589555 788 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
COL9A1P20849 AC073389.2-202ENST00000607450 441 ntTSL 5 BASIC17.72■□□□□ 0.43
COL9A1P20849 MIR6869-201ENST00000619434 62 ntBASIC17.72■□□□□ 0.43
COL9A1P20849 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC17.72■□□□□ 0.43
COL9A1P20849 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
COL9A1P20849 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
COL9A1P20849 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
COL9A1P20849 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC17.72■□□□□ 0.43
COL9A1P20849 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
COL9A1P20849 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC17.72■□□□□ 0.43
COL9A1P20849 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
COL9A1P20849 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
COL9A1P20849 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
COL9A1P20849 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC17.72■□□□□ 0.43
COL9A1P20849 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
COL9A1P20849 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
COL9A1P20849 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
COL9A1P20849 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
COL9A1P20849 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC17.71■□□□□ 0.43
COL9A1P20849 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
COL9A1P20849 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC17.71■□□□□ 0.43
COL9A1P20849 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC17.71■□□□□ 0.43
COL9A1P20849 AC009949.1-201ENST00000623048 1830 ntBASIC17.71■□□□□ 0.43
COL9A1P20849 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC17.71■□□□□ 0.43
COL9A1P20849 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
COL9A1P20849 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
COL9A1P20849 SPDYE7P-202ENST00000420373 878 ntBASIC17.71■□□□□ 0.43
COL9A1P20849 AL671277.1-201ENST00000429656 993 ntBASIC17.71■□□□□ 0.43
COL9A1P20849 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.43
COL9A1P20849 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.43
COL9A1P20849 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.43
COL9A1P20849 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC17.71■□□□□ 0.43
COL9A1P20849 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC17.71■□□□□ 0.43
COL9A1P20849 GALNT9-208ENST00000541995 1001 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
COL9A1P20849 FOS-206ENST00000555347 1280 ntTSL 2 BASIC17.71■□□□□ 0.43
COL9A1P20849 AC244093.1-201ENST00000610837 814 ntBASIC17.71■□□□□ 0.43
COL9A1P20849 AL031056.2-201ENST00000637957 1217 ntTSL 5 BASIC17.71■□□□□ 0.43
COL9A1P20849 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
COL9A1P20849 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
COL9A1P20849 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.43
COL9A1P20849 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
COL9A1P20849 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
COL9A1P20849 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
COL9A1P20849 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC17.71■□□□□ 0.43
COL9A1P20849 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
COL9A1P20849 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
COL9A1P20849 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC17.71■□□□□ 0.42
COL9A1P20849 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC17.71■□□□□ 0.42
COL9A1P20849 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC17.71■□□□□ 0.42
COL9A1P20849 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC17.71■□□□□ 0.42
COL9A1P20849 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC17.7■□□□□ 0.42
COL9A1P20849 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC17.7■□□□□ 0.42
COL9A1P20849 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
COL9A1P20849 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
COL9A1P20849 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC17.7■□□□□ 0.42
COL9A1P20849 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC17.7■□□□□ 0.42
COL9A1P20849 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC17.7■□□□□ 0.42
COL9A1P20849 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC17.7■□□□□ 0.42
COL9A1P20849 PC-208ENST00000529047 1607 ntTSL 3 BASIC17.7■□□□□ 0.42
COL9A1P20849 GTSF1-201ENST00000305879 804 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
COL9A1P20849 FAM86HP-203ENST00000511564 521 ntTSL 2 BASIC17.7■□□□□ 0.42
COL9A1P20849 FANCA-204ENST00000534992 1088 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 39.7 ms