Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
VCANP13611 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC17.75■□□□□ 0.43
VCANP13611 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
VCANP13611 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
VCANP13611 NXT2-202ENST00000372103 1085 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
VCANP13611 NTMT1-202ENST00000372481 741 ntTSL 2 BASIC17.75■□□□□ 0.43
VCANP13611 Z82214.2-201ENST00000420269 531 ntTSL 4 BASIC17.75■□□□□ 0.43
VCANP13611 AL158198.1-201ENST00000449143 380 ntTSL 3 BASIC17.75■□□□□ 0.43
VCANP13611 CD7-202ENST00000578509 925 ntTSL 3 BASIC17.75■□□□□ 0.43
VCANP13611 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC17.75■□□□□ 0.43
VCANP13611 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
VCANP13611 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
VCANP13611 AC092978.1-201ENST00000474979 1309 ntTSL 5 BASIC17.75■□□□□ 0.43
VCANP13611 AC092978.1-202ENST00000637590 1327 ntBASIC17.75■□□□□ 0.43
VCANP13611 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
VCANP13611 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
VCANP13611 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
VCANP13611 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC17.75■□□□□ 0.43
VCANP13611 PRPSAP2-216ENST00000536323 1872 ntTSL 2 BASIC17.75■□□□□ 0.43
VCANP13611 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC17.74■□□□□ 0.43
VCANP13611 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC17.74■□□□□ 0.43
VCANP13611 AL161785.2-201ENST00000427080 966 ntTSL 3 BASIC17.74■□□□□ 0.43
VCANP13611 AC090164.4-201ENST00000632451 313 ntTSL 5 BASIC17.74■□□□□ 0.43
VCANP13611 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
VCANP13611 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC17.74■□□□□ 0.43
VCANP13611 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC17.74■□□□□ 0.43
VCANP13611 FKBP2-201ENST00000309366 657 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
VCANP13611 IGHV3-35-201ENST00000390617 366 ntAPPRIS P1 BASIC17.74■□□□□ 0.43
VCANP13611 TRMT112-206ENST00000544844 1106 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
VCANP13611 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
VCANP13611 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
VCANP13611 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC17.74■□□□□ 0.43
VCANP13611 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
VCANP13611 COBL-210ENST00000632460 1941 ntTSL 5 BASIC17.74■□□□□ 0.43
VCANP13611 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC17.74■□□□□ 0.43
VCANP13611 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC17.74■□□□□ 0.43
VCANP13611 AC011495.1-201ENST00000498085 584 ntBASIC17.74■□□□□ 0.43
VCANP13611 AC009134.1-201ENST00000571939 443 ntTSL 3 BASIC17.74■□□□□ 0.43
VCANP13611 PHOSPHO2-207ENST00000616524 1253 ntAPPRIS P1 TSL 3 BASIC17.74■□□□□ 0.43
VCANP13611 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
VCANP13611 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
VCANP13611 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC17.73■□□□□ 0.43
VCANP13611 MYLKP1-201ENST00000509077 1580 ntBASIC17.73■□□□□ 0.43
VCANP13611 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC17.73■□□□□ 0.43
VCANP13611 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
VCANP13611 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
VCANP13611 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
VCANP13611 LINC00229-201ENST00000443783 500 ntTSL 2 BASIC17.73■□□□□ 0.43
VCANP13611 TNNT1-211ENST00000588426 683 ntTSL 5 BASIC17.73■□□□□ 0.43
VCANP13611 AC243960.2-201ENST00000600996 747 ntBASIC17.73■□□□□ 0.43
VCANP13611 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC17.73■□□□□ 0.43
VCANP13611 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
VCANP13611 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
VCANP13611 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
VCANP13611 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC17.73■□□□□ 0.43
VCANP13611 TNFRSF14-AS1-206ENST00000452793 569 ntTSL 3 BASIC17.73■□□□□ 0.43
VCANP13611 LINC02356-202ENST00000552663 314 ntTSL 3 BASIC17.73■□□□□ 0.43
VCANP13611 RPS5-209ENST00000601521 1203 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
VCANP13611 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
VCANP13611 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
VCANP13611 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
VCANP13611 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
VCANP13611 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC17.73■□□□□ 0.43
VCANP13611 CTSW-201ENST00000307886 1300 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
VCANP13611 NSL1-201ENST00000366976 722 ntTSL 2 BASIC17.73■□□□□ 0.43
VCANP13611 ZDHHC12-201ENST00000372663 1129 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
VCANP13611 MFAP2-201ENST00000375534 970 ntAPPRIS P1 TSL 2 BASIC17.73■□□□□ 0.43
VCANP13611 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
VCANP13611 OCIAD1-202ENST00000381473 1594 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
VCANP13611 CYB5A-203ENST00000397914 619 ntTSL 3 BASIC17.73■□□□□ 0.43
VCANP13611 FAM166B-201ENST00000399742 958 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
VCANP13611 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC17.73■□□□□ 0.43
VCANP13611 FANCA-204ENST00000534992 1088 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
VCANP13611 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC17.73■□□□□ 0.43
VCANP13611 RNF167-214ENST00000576229 1436 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
VCANP13611 IKZF1-217ENST00000612658 962 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
VCANP13611 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
VCANP13611 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
VCANP13611 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC17.72■□□□□ 0.43
VCANP13611 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC17.72■□□□□ 0.43
VCANP13611 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
VCANP13611 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
VCANP13611 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
VCANP13611 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC17.72■□□□□ 0.43
VCANP13611 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC17.72■□□□□ 0.43
VCANP13611 SMIM29-202ENST00000394990 792 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
VCANP13611 FAM86HP-203ENST00000511564 521 ntTSL 2 BASIC17.72■□□□□ 0.43
VCANP13611 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
VCANP13611 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
VCANP13611 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
VCANP13611 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
VCANP13611 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC17.72■□□□□ 0.43
VCANP13611 LDHBP1-201ENST00000455730 1119 ntBASIC17.72■□□□□ 0.43
VCANP13611 PLEKHA7-214ENST00000532079 565 ntTSL 5 BASIC17.72■□□□□ 0.43
VCANP13611 LINC01775-201ENST00000587826 371 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
VCANP13611 AC010327.1-201ENST00000587871 975 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
VCANP13611 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
VCANP13611 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC17.72■□□□□ 0.43
VCANP13611 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
VCANP13611 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 34.8 ms