Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC17.85■□□□□ 0.45
COL6A3P12111 CDC14C-201ENST00000428251 1719 ntBASIC17.85■□□□□ 0.45
COL6A3P12111 PRDX5-203ENST00000352435 596 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
COL6A3P12111 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
COL6A3P12111 AC098850.1-201ENST00000419919 790 ntBASIC17.85■□□□□ 0.45
COL6A3P12111 AC136475.5-202ENST00000524824 587 ntTSL 4 BASIC17.85■□□□□ 0.45
COL6A3P12111 MBP-227ENST00000526111 581 ntTSL 4 BASIC17.85■□□□□ 0.45
COL6A3P12111 IRF3-223ENST00000599223 1055 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
COL6A3P12111 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
COL6A3P12111 NFU1-201ENST00000303698 1034 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
COL6A3P12111 AGER-204ENST00000375067 1250 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
COL6A3P12111 TRIM74-202ENST00000395244 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
COL6A3P12111 TRIM73-204ENST00000447409 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
COL6A3P12111 LINC02028-216ENST00000609015 732 ntTSL 5 BASIC17.84■□□□□ 0.45
COL6A3P12111 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
COL6A3P12111 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC17.84■□□□□ 0.45
COL6A3P12111 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC17.84■□□□□ 0.45
COL6A3P12111 HILPDA-201ENST00000257696 1349 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
COL6A3P12111 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
COL6A3P12111 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
COL6A3P12111 TRIM50-202ENST00000453152 1599 ntAPPRIS P1 TSL 2 BASIC17.84■□□□□ 0.45
COL6A3P12111 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC17.84■□□□□ 0.45
COL6A3P12111 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC17.84■□□□□ 0.45
COL6A3P12111 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
COL6A3P12111 C15orf48-202ENST00000396650 732 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
COL6A3P12111 TMEM176B-202ENST00000429904 1206 ntAPPRIS P1 TSL 2 BASIC17.84■□□□□ 0.45
COL6A3P12111 AC087163.2-201ENST00000457299 853 ntBASIC17.84■□□□□ 0.45
COL6A3P12111 PSMB5-204ENST00000460922 729 ntTSL 2 BASIC17.84■□□□□ 0.45
COL6A3P12111 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
COL6A3P12111 AC109635.5-201ENST00000533593 962 ntBASIC17.84■□□□□ 0.45
COL6A3P12111 AC009133.2-201ENST00000566537 547 ntTSL 4 BASIC17.84■□□□□ 0.45
COL6A3P12111 AC008743.1-201ENST00000596350 813 ntTSL 4 BASIC17.84■□□□□ 0.45
COL6A3P12111 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC17.84■□□□□ 0.45
COL6A3P12111 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
COL6A3P12111 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
COL6A3P12111 AL450003.2-201ENST00000450445 428 ntTSL 5 BASIC17.83■□□□□ 0.45
COL6A3P12111 LAMA5-AS1-203ENST00000478167 690 ntTSL 3 BASIC17.83■□□□□ 0.45
COL6A3P12111 NEU3-203ENST00000529024 581 ntTSL 3 BASIC17.83■□□□□ 0.45
COL6A3P12111 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.45
COL6A3P12111 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
COL6A3P12111 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
COL6A3P12111 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.45
COL6A3P12111 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC17.83■□□□□ 0.44
COL6A3P12111 IGF1-201ENST00000307046 1097 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
COL6A3P12111 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
COL6A3P12111 IGF1-203ENST00000392904 761 ntTSL 5 BASIC17.83■□□□□ 0.44
COL6A3P12111 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC17.83■□□□□ 0.44
COL6A3P12111 AC018653.3-201ENST00000544657 749 ntTSL 3 BASIC17.83■□□□□ 0.44
COL6A3P12111 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
COL6A3P12111 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC17.83■□□□□ 0.44
COL6A3P12111 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
COL6A3P12111 AC009949.1-201ENST00000623048 1830 ntBASIC17.83■□□□□ 0.44
COL6A3P12111 HIST1H2AC-203ENST00000602637 1462 ntAPPRIS P1 TSL 2 BASIC17.83■□□□□ 0.44
COL6A3P12111 MRFAP1-202ENST00000382581 1584 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
COL6A3P12111 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
COL6A3P12111 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC17.83■□□□□ 0.44
COL6A3P12111 MOGAT3-202ENST00000379423 933 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
COL6A3P12111 AL021707.3-201ENST00000418803 527 ntTSL 5 BASIC17.83■□□□□ 0.44
COL6A3P12111 RPS24-203ENST00000435275 656 ntAPPRIS ALT1 TSL 2 BASIC17.83■□□□□ 0.44
COL6A3P12111 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
COL6A3P12111 ZNF707-203ENST00000442058 562 ntTSL 4 BASIC17.83■□□□□ 0.44
COL6A3P12111 BX324167.1-201ENST00000451118 805 ntTSL 5 BASIC17.83■□□□□ 0.44
COL6A3P12111 RPS24-214ENST00000613865 538 ntTSL 5 BASIC17.83■□□□□ 0.44
COL6A3P12111 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
COL6A3P12111 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
COL6A3P12111 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC17.82■□□□□ 0.44
COL6A3P12111 UPK3A-201ENST00000216211 1051 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
COL6A3P12111 RPL37AP1-201ENST00000412502 279 ntBASIC17.82■□□□□ 0.44
COL6A3P12111 ZSCAN32-210ENST00000573830 668 ntTSL 3 BASIC17.82■□□□□ 0.44
COL6A3P12111 AL354740.1-203ENST00000593917 424 ntTSL 3 BASIC17.82■□□□□ 0.44
COL6A3P12111 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC17.82■□□□□ 0.44
COL6A3P12111 ACOT7-204ENST00000377855 1614 ntAPPRIS P4 TSL 1 (best) BASIC17.82■□□□□ 0.44
COL6A3P12111 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
COL6A3P12111 ACTG1P4-201ENST00000425123 1122 ntBASIC17.82■□□□□ 0.44
COL6A3P12111 AL161785.3-201ENST00000435157 395 ntTSL 3 BASIC17.82■□□□□ 0.44
COL6A3P12111 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
COL6A3P12111 LINC01301-205ENST00000531654 1347 ntTSL 5 BASIC17.82■□□□□ 0.44
COL6A3P12111 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC17.82■□□□□ 0.44
COL6A3P12111 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC17.82■□□□□ 0.44
COL6A3P12111 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC17.82■□□□□ 0.44
COL6A3P12111 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC17.82■□□□□ 0.44
COL6A3P12111 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC17.82■□□□□ 0.44
COL6A3P12111 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC17.82■□□□□ 0.44
COL6A3P12111 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
COL6A3P12111 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
COL6A3P12111 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC17.82■□□□□ 0.44
COL6A3P12111 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC17.82■□□□□ 0.44
COL6A3P12111 ESR2-206ENST00000553796 1634 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
COL6A3P12111 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
COL6A3P12111 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
COL6A3P12111 AC106786.1-201ENST00000442777 792 ntTSL 3 BASIC17.81■□□□□ 0.44
COL6A3P12111 BMS1P17-203ENST00000444357 552 ntTSL 4 BASIC17.81■□□□□ 0.44
COL6A3P12111 CTBP2P5-201ENST00000454986 1264 ntBASIC17.81■□□□□ 0.44
COL6A3P12111 AC084859.1-201ENST00000533002 670 ntTSL 4 BASIC17.81■□□□□ 0.44
COL6A3P12111 AC010491.1-203ENST00000564167 638 ntTSL 2 BASIC17.81■□□□□ 0.44
COL6A3P12111 AC090386.1-202ENST00000586610 469 ntTSL 3 BASIC17.81■□□□□ 0.44
COL6A3P12111 BMS1P22-203ENST00000609679 552 ntTSL 4 BASIC17.81■□□□□ 0.44
COL6A3P12111 PDCD6-212ENST00000614778 1050 ntTSL 2 BASIC17.81■□□□□ 0.44
COL6A3P12111 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
COL6A3P12111 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC17.81■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 38.2 ms