Protein–RNA interactions for Protein: O96005

CLPTM1, Cleft lip and palate transmembrane protein 1, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLPTM1O96005 VPS16-203ENST00000380469 2318 ntTSL 2 BASIC16.44■□□□□ 0.22
CLPTM1O96005 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CLPTM1O96005 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CLPTM1O96005 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC16.44■□□□□ 0.22
CLPTM1O96005 CRYGFP-201ENST00000418459 633 ntBASIC16.44■□□□□ 0.22
CLPTM1O96005 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CLPTM1O96005 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
CLPTM1O96005 GLRB-205ENST00000512619 728 ntTSL 3 BASIC16.44■□□□□ 0.22
CLPTM1O96005 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CLPTM1O96005 AC073912.3-201ENST00000624414 853 ntBASIC16.44■□□□□ 0.22
CLPTM1O96005 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC16.44■□□□□ 0.22
CLPTM1O96005 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CLPTM1O96005 RGPD8-201ENST00000302558 5576 ntAPPRIS P2 TSL 1 (best) BASIC16.44■□□□□ 0.22
CLPTM1O96005 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
CLPTM1O96005 CBX6-202ENST00000407418 6122 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
CLPTM1O96005 CBFB-201ENST00000290858 3136 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
CLPTM1O96005 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CLPTM1O96005 GHDC-207ENST00000587427 2396 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CLPTM1O96005 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
CLPTM1O96005 SYNE3-203ENST00000554873 2826 ntTSL 5 BASIC16.44■□□□□ 0.22
CLPTM1O96005 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CLPTM1O96005 CDKN2AIP-203ENST00000504169 2721 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CLPTM1O96005 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CLPTM1O96005 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CLPTM1O96005 YY1-201ENST00000262238 6697 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CLPTM1O96005 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC16.44■□□□□ 0.22
CLPTM1O96005 CD68-201ENST00000250092 1878 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
CLPTM1O96005 AC026412.1-203ENST00000507841 2338 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
CLPTM1O96005 MBP-202ENST00000355994 2772 ntTSL 5 BASIC16.43■□□□□ 0.22
CLPTM1O96005 FEM1C-201ENST00000274457 5816 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CLPTM1O96005 ITPR3-201ENST00000374316 9870 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
CLPTM1O96005 IQCE-217ENST00000623361 6775 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
CLPTM1O96005 EPS8L2-231ENST00000614442 3188 ntAPPRIS ALT2 TSL 5 BASIC16.43■□□□□ 0.22
CLPTM1O96005 AC063926.3-201ENST00000624734 5658 ntBASIC16.43■□□□□ 0.22
CLPTM1O96005 NFATC4-202ENST00000413692 5700 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
CLPTM1O96005 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC16.43■□□□□ 0.22
CLPTM1O96005 TTBK2-208ENST00000622375 6891 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
CLPTM1O96005 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC16.43■□□□□ 0.22
CLPTM1O96005 MMP23A-201ENST00000234610 1017 ntBASIC16.43■□□□□ 0.22
CLPTM1O96005 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CLPTM1O96005 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC16.43■□□□□ 0.22
CLPTM1O96005 AC087499.1-201ENST00000418141 1075 ntBASIC16.43■□□□□ 0.22
CLPTM1O96005 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC16.43■□□□□ 0.22
CLPTM1O96005 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC16.43■□□□□ 0.22
CLPTM1O96005 ARL16-209ENST00000573715 763 ntTSL 3 BASIC16.43■□□□□ 0.22
CLPTM1O96005 ARL16-211ENST00000576135 694 ntTSL 3 BASIC16.43■□□□□ 0.22
CLPTM1O96005 GRAMD4P8-201ENST00000605465 1115 ntBASIC16.43■□□□□ 0.22
CLPTM1O96005 DGCR10-201ENST00000609839 495 ntBASIC16.43■□□□□ 0.22
CLPTM1O96005 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC16.43■□□□□ 0.22
CLPTM1O96005 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC16.43■□□□□ 0.22
CLPTM1O96005 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC16.43■□□□□ 0.22
CLPTM1O96005 SCOC-211ENST00000614192 1959 ntAPPRIS P2 TSL 1 (best) BASIC16.43■□□□□ 0.22
CLPTM1O96005 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC16.43■□□□□ 0.22
CLPTM1O96005 RAB31-207ENST00000578921 4055 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CLPTM1O96005 AL662844.4-201ENST00000606367 2838 ntBASIC16.43■□□□□ 0.22
CLPTM1O96005 AC104640.1-201ENST00000562617 2109 ntBASIC16.43■□□□□ 0.22
CLPTM1O96005 DAB2IP-201ENST00000259371 5469 ntAPPRIS P4 TSL 5 BASIC16.43■□□□□ 0.22
CLPTM1O96005 ADGRA1-AS1-202ENST00000444433 2646 ntTSL 3 BASIC16.43■□□□□ 0.22
CLPTM1O96005 FDX1-201ENST00000260270 3206 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CLPTM1O96005 OTX1-201ENST00000282549 2861 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CLPTM1O96005 OTX1-202ENST00000366671 2861 ntAPPRIS P1 TSL 3 BASIC16.43■□□□□ 0.22
CLPTM1O96005 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC16.43■□□□□ 0.22
CLPTM1O96005 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
CLPTM1O96005 RNF168-201ENST00000318037 5347 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CLPTM1O96005 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CLPTM1O96005 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC16.42■□□□□ 0.22
CLPTM1O96005 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC16.42■□□□□ 0.22
CLPTM1O96005 MCF2L-232ENST00000535094 3752 ntAPPRIS ALT2 TSL 2 BASIC16.42■□□□□ 0.22
CLPTM1O96005 ITGB1BP1-204ENST00000360635 4859 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
CLPTM1O96005 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
CLPTM1O96005 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC16.42■□□□□ 0.22
CLPTM1O96005 NEO1-206ENST00000558964 4441 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
CLPTM1O96005 CYP2U1-201ENST00000332884 4944 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CLPTM1O96005 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC16.42■□□□□ 0.22
CLPTM1O96005 WDR1-202ENST00000382451 2722 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
CLPTM1O96005 ITPKB-201ENST00000272117 5822 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CLPTM1O96005 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CLPTM1O96005 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
CLPTM1O96005 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC16.42■□□□□ 0.22
CLPTM1O96005 TMEM184A-201ENST00000297477 6276 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CLPTM1O96005 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CLPTM1O96005 MOB3B-201ENST00000262244 6454 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CLPTM1O96005 SPOCK1-202ENST00000394945 4846 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CLPTM1O96005 RCC2P3-201ENST00000418112 1537 ntBASIC16.42■□□□□ 0.22
CLPTM1O96005 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CLPTM1O96005 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC16.42■□□□□ 0.22
CLPTM1O96005 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
CLPTM1O96005 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
CLPTM1O96005 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC16.42■□□□□ 0.22
CLPTM1O96005 FITM1-202ENST00000559294 800 ntBASIC16.42■□□□□ 0.22
CLPTM1O96005 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC16.42■□□□□ 0.22
CLPTM1O96005 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC16.42■□□□□ 0.22
CLPTM1O96005 KIAA1217-206ENST00000376462 6123 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
CLPTM1O96005 ITGAV-202ENST00000374907 6903 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
CLPTM1O96005 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC16.42■□□□□ 0.22
CLPTM1O96005 TMED7-TICAM2-201ENST00000282382 3491 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
CLPTM1O96005 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
CLPTM1O96005 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
CLPTM1O96005 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
CLPTM1O96005 CNOT8-204ENST00000517876 2708 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 25.2 ms