Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 AC003669.1-201ENST00000334569 611 ntBASIC16.66■□□□□ 0.26
SEMA3DO95025 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
SEMA3DO95025 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC16.66■□□□□ 0.26
SEMA3DO95025 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
SEMA3DO95025 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC16.66■□□□□ 0.26
SEMA3DO95025 AP000867.3-201ENST00000524675 377 ntBASIC16.66■□□□□ 0.26
SEMA3DO95025 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC16.66■□□□□ 0.26
SEMA3DO95025 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC16.66■□□□□ 0.26
SEMA3DO95025 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC16.66■□□□□ 0.26
SEMA3DO95025 CBARP-204ENST00000590083 4261 ntAPPRIS P2 TSL 1 (best) BASIC16.66■□□□□ 0.26
SEMA3DO95025 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
SEMA3DO95025 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC16.66■□□□□ 0.26
SEMA3DO95025 MAP3K6-202ENST00000374040 4309 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
SEMA3DO95025 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC16.66■□□□□ 0.26
SEMA3DO95025 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
SEMA3DO95025 GCGR-201ENST00000400723 2051 ntAPPRIS P2 TSL 1 (best) BASIC16.66■□□□□ 0.26
SEMA3DO95025 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
SEMA3DO95025 CACNA1I-201ENST00000401624 6740 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
SEMA3DO95025 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
SEMA3DO95025 ASTN2-202ENST00000313400 4747 ntAPPRIS ALT2 TSL 5 BASIC16.66■□□□□ 0.26
SEMA3DO95025 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
SEMA3DO95025 GUCY1B3-206ENST00000507146 2709 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
SEMA3DO95025 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
SEMA3DO95025 SBSPON-201ENST00000297354 3801 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
SEMA3DO95025 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC16.66■□□□□ 0.26
SEMA3DO95025 USP13-201ENST00000263966 8323 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
SEMA3DO95025 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
SEMA3DO95025 CYTH2-204ENST00000452733 4780 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
SEMA3DO95025 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SEMA3DO95025 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SEMA3DO95025 FAM46A-201ENST00000320172 5609 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
SEMA3DO95025 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC16.65■□□□□ 0.26
SEMA3DO95025 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
SEMA3DO95025 AC080080.1-201ENST00000625121 2420 ntBASIC16.65■□□□□ 0.26
SEMA3DO95025 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SEMA3DO95025 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SEMA3DO95025 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC16.65■□□□□ 0.26
SEMA3DO95025 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC16.65■□□□□ 0.26
SEMA3DO95025 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
SEMA3DO95025 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
SEMA3DO95025 AC092119.3-201ENST00000612618 583 ntBASIC16.65■□□□□ 0.26
SEMA3DO95025 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC16.65■□□□□ 0.26
SEMA3DO95025 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC16.65■□□□□ 0.26
SEMA3DO95025 BACE2-203ENST00000347667 8764 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
SEMA3DO95025 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
SEMA3DO95025 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SEMA3DO95025 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC16.65■□□□□ 0.26
SEMA3DO95025 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
SEMA3DO95025 AC026954.2-202ENST00000575474 2571 ntAPPRIS P5 TSL 5 BASIC16.65■□□□□ 0.26
SEMA3DO95025 AC046158.3-201ENST00000624947 2558 ntBASIC16.65■□□□□ 0.26
SEMA3DO95025 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC16.65■□□□□ 0.26
SEMA3DO95025 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SEMA3DO95025 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
SEMA3DO95025 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
SEMA3DO95025 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SEMA3DO95025 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
SEMA3DO95025 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC16.64■□□□□ 0.26
SEMA3DO95025 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC16.64■□□□□ 0.26
SEMA3DO95025 XKR7-201ENST00000562532 7844 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.26
SEMA3DO95025 AC009336.1-201ENST00000608941 1553 ntBASIC16.64■□□□□ 0.25
SEMA3DO95025 STK39-201ENST00000355999 3820 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
SEMA3DO95025 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC16.64■□□□□ 0.25
SEMA3DO95025 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
SEMA3DO95025 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
SEMA3DO95025 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC16.64■□□□□ 0.25
SEMA3DO95025 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC16.64■□□□□ 0.25
SEMA3DO95025 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
SEMA3DO95025 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
SEMA3DO95025 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC16.64■□□□□ 0.25
SEMA3DO95025 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
SEMA3DO95025 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC16.64■□□□□ 0.25
SEMA3DO95025 SELENOH-204ENST00000534355 818 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
SEMA3DO95025 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC16.64■□□□□ 0.25
SEMA3DO95025 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC16.64■□□□□ 0.25
SEMA3DO95025 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
SEMA3DO95025 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC16.64■□□□□ 0.25
SEMA3DO95025 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
SEMA3DO95025 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC16.64■□□□□ 0.25
SEMA3DO95025 SHANK1-204ENST00000391814 6622 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
SEMA3DO95025 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
SEMA3DO95025 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
SEMA3DO95025 TBC1D2-205ENST00000465784 3349 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
SEMA3DO95025 VSTM2A-204ENST00000407838 3112 ntAPPRIS P1 TSL 3 BASIC16.64■□□□□ 0.25
SEMA3DO95025 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
SEMA3DO95025 MAPKAP1-208ENST00000394063 2977 ntTSL 5 BASIC16.64■□□□□ 0.25
SEMA3DO95025 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC16.64■□□□□ 0.25
SEMA3DO95025 OGG1-206ENST00000349503 1950 ntTSL 5 BASIC16.64■□□□□ 0.25
SEMA3DO95025 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
SEMA3DO95025 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC16.64■□□□□ 0.25
SEMA3DO95025 PKD1P5-201ENST00000532415 10291 ntBASIC16.64■□□□□ 0.25
SEMA3DO95025 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
SEMA3DO95025 SENP5-201ENST00000323460 6308 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
SEMA3DO95025 TSC2-201ENST00000219476 6156 ntAPPRIS P3 TSL 5 BASIC16.63■□□□□ 0.25
SEMA3DO95025 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
SEMA3DO95025 TLCD2-201ENST00000330676 5971 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
SEMA3DO95025 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
SEMA3DO95025 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
SEMA3DO95025 NEO1-201ENST00000261908 7088 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
SEMA3DO95025 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC16.63■□□□□ 0.25
SEMA3DO95025 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC16.63■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 33.2 ms