Protein–RNA interactions for Protein: O76039

CDKL5, Cyclin-dependent kinase-like 5, humanhuman

Predictions only

Length 1,030 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDKL5O76039 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
CDKL5O76039 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC20.18■□□□□ 0.82
CDKL5O76039 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
CDKL5O76039 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
CDKL5O76039 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
CDKL5O76039 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC20.18■□□□□ 0.82
CDKL5O76039 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CDKL5O76039 TLE1-202ENST00000376484 666 ntTSL 3 BASIC20.18■□□□□ 0.82
CDKL5O76039 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC20.18■□□□□ 0.82
CDKL5O76039 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC20.18■□□□□ 0.82
CDKL5O76039 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC20.18■□□□□ 0.82
CDKL5O76039 AL121772.3-201ENST00000610840 674 ntBASIC20.18■□□□□ 0.82
CDKL5O76039 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC20.18■□□□□ 0.82
CDKL5O76039 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
CDKL5O76039 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC20.18■□□□□ 0.82
CDKL5O76039 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CDKL5O76039 MRPS30-202ENST00000507110 1678 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CDKL5O76039 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC20.18■□□□□ 0.82
CDKL5O76039 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CDKL5O76039 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC20.18■□□□□ 0.82
CDKL5O76039 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
CDKL5O76039 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CDKL5O76039 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC20.18■□□□□ 0.82
CDKL5O76039 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
CDKL5O76039 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CDKL5O76039 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
CDKL5O76039 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
CDKL5O76039 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CDKL5O76039 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CDKL5O76039 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
CDKL5O76039 ZFP91-201ENST00000316059 5220 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CDKL5O76039 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
CDKL5O76039 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
CDKL5O76039 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
CDKL5O76039 AC106820.2-201ENST00000563775 3264 ntBASIC20.17■□□□□ 0.82
CDKL5O76039 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC20.17■□□□□ 0.82
CDKL5O76039 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
CDKL5O76039 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC20.17■□□□□ 0.82
CDKL5O76039 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
CDKL5O76039 AL121761.2-201ENST00000598007 1648 ntBASIC20.17■□□□□ 0.82
CDKL5O76039 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
CDKL5O76039 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC20.17■□□□□ 0.82
CDKL5O76039 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CDKL5O76039 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CDKL5O76039 MED16-201ENST00000269814 1199 ntTSL 5 BASIC20.17■□□□□ 0.82
CDKL5O76039 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CDKL5O76039 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC20.17■□□□□ 0.82
CDKL5O76039 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC20.17■□□□□ 0.82
CDKL5O76039 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC20.17■□□□□ 0.82
CDKL5O76039 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC20.17■□□□□ 0.82
CDKL5O76039 AC073592.4-201ENST00000623827 446 ntBASIC20.17■□□□□ 0.82
CDKL5O76039 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC20.17■□□□□ 0.82
CDKL5O76039 PCCB-201ENST00000251654 1833 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
CDKL5O76039 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC20.17■□□□□ 0.82
CDKL5O76039 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
CDKL5O76039 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
CDKL5O76039 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC20.17■□□□□ 0.82
CDKL5O76039 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC20.17■□□□□ 0.82
CDKL5O76039 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC20.17■□□□□ 0.82
CDKL5O76039 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC20.17■□□□□ 0.82
CDKL5O76039 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC20.17■□□□□ 0.82
CDKL5O76039 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
CDKL5O76039 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CDKL5O76039 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CDKL5O76039 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CDKL5O76039 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CDKL5O76039 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
CDKL5O76039 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC20.16■□□□□ 0.82
CDKL5O76039 KLF3-201ENST00000261438 5122 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CDKL5O76039 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC20.16■□□□□ 0.82
CDKL5O76039 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC20.16■□□□□ 0.82
CDKL5O76039 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC20.16■□□□□ 0.82
CDKL5O76039 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
CDKL5O76039 ROMO1-203ENST00000374077 422 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CDKL5O76039 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC20.16■□□□□ 0.82
CDKL5O76039 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
CDKL5O76039 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC20.16■□□□□ 0.82
CDKL5O76039 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC20.16■□□□□ 0.82
CDKL5O76039 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CDKL5O76039 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC20.16■□□□□ 0.82
CDKL5O76039 FBXO7-201ENST00000266087 2195 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CDKL5O76039 PRORSD1P-202ENST00000563365 2154 ntBASIC20.16■□□□□ 0.82
CDKL5O76039 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
CDKL5O76039 ADGRB2-212ENST00000527361 4919 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
CDKL5O76039 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC20.16■□□□□ 0.82
CDKL5O76039 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC20.16■□□□□ 0.82
CDKL5O76039 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
CDKL5O76039 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
CDKL5O76039 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC20.16■□□□□ 0.82
CDKL5O76039 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC20.16■□□□□ 0.82
CDKL5O76039 AC079776.2-201ENST00000641154 1609 ntBASIC20.16■□□□□ 0.82
CDKL5O76039 OR6D1P-203ENST00000641209 4860 ntBASIC20.16■□□□□ 0.82
CDKL5O76039 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CDKL5O76039 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CDKL5O76039 CLUH-201ENST00000435359 5224 ntAPPRIS P2 TSL 5 BASIC20.16■□□□□ 0.82
CDKL5O76039 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC20.16■□□□□ 0.82
CDKL5O76039 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CDKL5O76039 DDHD1-201ENST00000323669 5503 ntTSL 2 BASIC20.16■□□□□ 0.82
CDKL5O76039 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC20.16■□□□□ 0.82
CDKL5O76039 RAI1-201ENST00000353383 7662 ntAPPRIS P2 TSL 1 (best) BASIC20.15■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 57.2 ms