Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
COL6A5A8TX70 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC13.28□□□□□ -0.28
COL6A5A8TX70 AC098850.1-201ENST00000419919 790 ntBASIC13.28□□□□□ -0.28
COL6A5A8TX70 AL928654.4-206ENST00000551180 980 ntAPPRIS ALT2 TSL 5 BASIC13.28□□□□□ -0.28
COL6A5A8TX70 MRPL34-202ENST00000594999 555 ntAPPRIS P2 TSL 2 BASIC13.28□□□□□ -0.28
COL6A5A8TX70 BTNL10-201ENST00000595971 695 ntBASIC13.28□□□□□ -0.28
COL6A5A8TX70 AL844908.2-201ENST00000609461 460 ntBASIC13.28□□□□□ -0.28
COL6A5A8TX70 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC13.28□□□□□ -0.28
COL6A5A8TX70 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC13.28□□□□□ -0.28
COL6A5A8TX70 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC13.28□□□□□ -0.28
COL6A5A8TX70 MEIKIN-203ENST00000442687 1315 ntAPPRIS P2 TSL 1 (best) BASIC13.28□□□□□ -0.28
COL6A5A8TX70 KCNAB2-212ENST00000458166 1336 ntTSL 2 BASIC13.28□□□□□ -0.28
COL6A5A8TX70 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC13.28□□□□□ -0.28
COL6A5A8TX70 AC105202.1-204ENST00000502167 1781 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
COL6A5A8TX70 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC13.28□□□□□ -0.28
COL6A5A8TX70 AC009949.1-201ENST00000623048 1830 ntBASIC13.28□□□□□ -0.28
COL6A5A8TX70 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC13.28□□□□□ -0.28
COL6A5A8TX70 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC13.28□□□□□ -0.28
COL6A5A8TX70 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC13.28□□□□□ -0.28
COL6A5A8TX70 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC13.28□□□□□ -0.28
COL6A5A8TX70 DUSP13-202ENST00000372700 781 ntTSL 3 BASIC13.28□□□□□ -0.28
COL6A5A8TX70 MFAP2-201ENST00000375534 970 ntAPPRIS P1 TSL 2 BASIC13.28□□□□□ -0.28
COL6A5A8TX70 SHBG-202ENST00000380450 1271 ntAPPRIS P3 TSL 1 (best) BASIC13.28□□□□□ -0.28
COL6A5A8TX70 TSPAN32-204ENST00000381121 999 ntAPPRIS ALT2 TSL 5 BASIC13.28□□□□□ -0.28
COL6A5A8TX70 BTBD6P1-201ENST00000412176 1267 ntBASIC13.28□□□□□ -0.28
COL6A5A8TX70 CALML4-206ENST00000467889 987 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
COL6A5A8TX70 ELK1P1-201ENST00000485699 580 ntBASIC13.28□□□□□ -0.28
COL6A5A8TX70 LINC01605-204ENST00000522718 1093 ntTSL 3 BASIC13.28□□□□□ -0.28
COL6A5A8TX70 AL133153.2-201ENST00000557524 303 ntTSL 3 BASIC13.28□□□□□ -0.28
COL6A5A8TX70 APRT-204ENST00000563655 709 ntTSL 5 BASIC13.28□□□□□ -0.28
COL6A5A8TX70 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC13.28□□□□□ -0.28
COL6A5A8TX70 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
COL6A5A8TX70 IL11RA-215ENST00000602473 1388 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
COL6A5A8TX70 RGS6-218ENST00000556437 1689 ntAPPRIS ALT1 TSL 1 (best) BASIC13.28□□□□□ -0.28
COL6A5A8TX70 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC13.28□□□□□ -0.28
COL6A5A8TX70 RIMS3-201ENST00000372683 1408 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
COL6A5A8TX70 ME2-218ENST00000640965 2476 ntTSL 5 BASIC13.28□□□□□ -0.28
COL6A5A8TX70 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
COL6A5A8TX70 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC13.28□□□□□ -0.28
COL6A5A8TX70 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
COL6A5A8TX70 FBLIM1-206ENST00000441801 1543 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
COL6A5A8TX70 JAG2-202ENST00000347004 5720 ntTSL 1 (best) BASIC13.27□□□□□ -0.28
COL6A5A8TX70 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC13.27□□□□□ -0.28
COL6A5A8TX70 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
COL6A5A8TX70 PHLDA2-201ENST00000314222 955 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
COL6A5A8TX70 TRIM74-202ENST00000395244 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.28
COL6A5A8TX70 MDP1-202ENST00000396833 582 ntTSL 1 (best) BASIC13.27□□□□□ -0.28
COL6A5A8TX70 MIR1247-201ENST00000408206 136 ntBASIC13.27□□□□□ -0.28
COL6A5A8TX70 GPAA1P2-201ENST00000417923 928 ntBASIC13.27□□□□□ -0.28
COL6A5A8TX70 AL162742.1-201ENST00000434792 954 ntTSL 2 BASIC13.27□□□□□ -0.28
COL6A5A8TX70 HILPDA-202ENST00000435296 785 ntAPPRIS P1 TSL 2 BASIC13.27□□□□□ -0.28
COL6A5A8TX70 LINC01939-201ENST00000445279 694 ntTSL 5 BASIC13.27□□□□□ -0.28
COL6A5A8TX70 TRIM73-204ENST00000447409 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.28
COL6A5A8TX70 C8orf37-AS1-202ENST00000517655 562 ntTSL 4 BASIC13.27□□□□□ -0.28
COL6A5A8TX70 CNOT8-214ENST00000520671 923 ntTSL 2 BASIC13.27□□□□□ -0.28
COL6A5A8TX70 AC025442.1-201ENST00000521596 481 ntTSL 2 BASIC13.27□□□□□ -0.28
COL6A5A8TX70 FADS2-212ENST00000522639 360 ntTSL 5 BASIC13.27□□□□□ -0.28
COL6A5A8TX70 AC135586.1-201ENST00000539323 574 ntBASIC13.27□□□□□ -0.28
COL6A5A8TX70 WASH4P-201ENST00000564273 1246 ntBASIC13.27□□□□□ -0.28
COL6A5A8TX70 FADS2-215ENST00000574708 385 ntTSL 3 BASIC13.27□□□□□ -0.28
COL6A5A8TX70 AP000894.3-201ENST00000582554 351 ntTSL 5 BASIC13.27□□□□□ -0.28
COL6A5A8TX70 AC010641.1-201ENST00000591757 529 ntTSL 3 BASIC13.27□□□□□ -0.28
COL6A5A8TX70 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC13.27□□□□□ -0.28
COL6A5A8TX70 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
COL6A5A8TX70 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC13.27□□□□□ -0.28
COL6A5A8TX70 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
COL6A5A8TX70 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC13.27□□□□□ -0.28
COL6A5A8TX70 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC13.27□□□□□ -0.29
COL6A5A8TX70 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC13.27□□□□□ -0.29
COL6A5A8TX70 MAGEA12-203ENST00000393900 1299 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
COL6A5A8TX70 AC008278.1-201ENST00000431117 568 ntTSL 4 BASIC13.27□□□□□ -0.29
COL6A5A8TX70 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
COL6A5A8TX70 KRT8P13-201ENST00000463294 1010 ntBASIC13.27□□□□□ -0.29
COL6A5A8TX70 AC233702.7-201ENST00000536958 924 ntTSL 5 BASIC13.27□□□□□ -0.29
COL6A5A8TX70 AC003070.2-201ENST00000589730 386 ntTSL 3 BASIC13.27□□□□□ -0.29
COL6A5A8TX70 AC008770.3-202ENST00000591944 567 ntTSL 4 BASIC13.27□□□□□ -0.29
COL6A5A8TX70 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
COL6A5A8TX70 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC13.27□□□□□ -0.29
COL6A5A8TX70 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
COL6A5A8TX70 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
COL6A5A8TX70 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC13.27□□□□□ -0.29
COL6A5A8TX70 LLGL2-209ENST00000578363 1393 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
COL6A5A8TX70 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
COL6A5A8TX70 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
COL6A5A8TX70 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
COL6A5A8TX70 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
COL6A5A8TX70 CCDC182-201ENST00000299415 832 ntAPPRIS P1 BASIC13.26□□□□□ -0.29
COL6A5A8TX70 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC13.26□□□□□ -0.29
COL6A5A8TX70 THPO-202ENST00000421442 1132 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
COL6A5A8TX70 AC253536.4-201ENST00000440539 267 ntBASIC13.26□□□□□ -0.29
COL6A5A8TX70 CD81-207ENST00000481687 890 ntTSL 2 BASIC13.26□□□□□ -0.29
COL6A5A8TX70 BRF2-202ENST00000520601 1192 ntTSL 3 BASIC13.26□□□□□ -0.29
COL6A5A8TX70 C19orf53-206ENST00000593274 491 ntTSL 2 BASIC13.26□□□□□ -0.29
COL6A5A8TX70 ALKBH7-203ENST00000599849 556 ntTSL 3 BASIC13.26□□□□□ -0.29
COL6A5A8TX70 AC006453.2-202ENST00000635968 827 ntTSL 5 BASIC13.26□□□□□ -0.29
COL6A5A8TX70 CTSW-201ENST00000307886 1300 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
COL6A5A8TX70 ECSIT-209ENST00000591104 1319 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
COL6A5A8TX70 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC13.26□□□□□ -0.29
COL6A5A8TX70 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC13.26□□□□□ -0.29
COL6A5A8TX70 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Retrieved 100 of 98,524 protein–RNA pairs in 28.7 ms