Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 AL671883.3-201ENST00000603274 991 ntBASIC16.87■□□□□ 0.29
VPS4AQ9UN37 AC024563.2-201ENST00000603282 481 ntBASIC16.87■□□□□ 0.29
VPS4AQ9UN37 ACYP2-209ENST00000607452 831 ntTSL 2 BASIC16.87■□□□□ 0.29
VPS4AQ9UN37 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC16.87■□□□□ 0.29
VPS4AQ9UN37 NME4-212ENST00000621774 904 ntTSL 3 BASIC16.87■□□□□ 0.29
VPS4AQ9UN37 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
VPS4AQ9UN37 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
VPS4AQ9UN37 KIF13B-206ENST00000524189 8745 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
VPS4AQ9UN37 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
VPS4AQ9UN37 HLA-J-201ENST00000462773 1622 ntBASIC16.87■□□□□ 0.29
VPS4AQ9UN37 SATB1-201ENST00000338745 7810 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
VPS4AQ9UN37 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC16.87■□□□□ 0.29
VPS4AQ9UN37 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
VPS4AQ9UN37 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC16.87■□□□□ 0.29
VPS4AQ9UN37 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
VPS4AQ9UN37 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC16.87■□□□□ 0.29
VPS4AQ9UN37 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
VPS4AQ9UN37 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC16.87■□□□□ 0.29
VPS4AQ9UN37 TAOK2-202ENST00000308893 5169 ntAPPRIS P4 TSL 1 (best) BASIC16.87■□□□□ 0.29
VPS4AQ9UN37 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC16.87■□□□□ 0.29
VPS4AQ9UN37 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC16.87■□□□□ 0.29
VPS4AQ9UN37 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC16.87■□□□□ 0.29
VPS4AQ9UN37 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
VPS4AQ9UN37 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC16.87■□□□□ 0.29
VPS4AQ9UN37 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
VPS4AQ9UN37 NLGN2-201ENST00000302926 4642 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
VPS4AQ9UN37 RAB11FIP5-205ENST00000486777 6120 ntTSL 5 BASIC16.87■□□□□ 0.29
VPS4AQ9UN37 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
VPS4AQ9UN37 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC16.86■□□□□ 0.29
VPS4AQ9UN37 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC16.86■□□□□ 0.29
VPS4AQ9UN37 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
VPS4AQ9UN37 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC16.86■□□□□ 0.29
VPS4AQ9UN37 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC16.86■□□□□ 0.29
VPS4AQ9UN37 EIF2AK4-201ENST00000263791 5499 ntAPPRIS P1 TSL 2 BASIC16.86■□□□□ 0.29
VPS4AQ9UN37 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
VPS4AQ9UN37 MIR574-201ENST00000385209 96 ntBASIC16.86■□□□□ 0.29
VPS4AQ9UN37 KRT18P65-201ENST00000439811 1286 ntBASIC16.86■□□□□ 0.29
VPS4AQ9UN37 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC16.86■□□□□ 0.29
VPS4AQ9UN37 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC16.86■□□□□ 0.29
VPS4AQ9UN37 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
VPS4AQ9UN37 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
VPS4AQ9UN37 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
VPS4AQ9UN37 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
VPS4AQ9UN37 AC009949.1-201ENST00000623048 1830 ntBASIC16.86■□□□□ 0.29
VPS4AQ9UN37 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC16.86■□□□□ 0.29
VPS4AQ9UN37 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC16.86■□□□□ 0.29
VPS4AQ9UN37 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC16.86■□□□□ 0.29
VPS4AQ9UN37 ARID1A-205ENST00000457599 6268 ntAPPRIS ALT2 TSL 5 BASIC16.86■□□□□ 0.29
VPS4AQ9UN37 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC16.86■□□□□ 0.29
VPS4AQ9UN37 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
VPS4AQ9UN37 KRT89P-201ENST00000620027 1478 ntBASIC16.86■□□□□ 0.29
VPS4AQ9UN37 TSPAN3-201ENST00000267970 6467 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
VPS4AQ9UN37 ZNF500-201ENST00000219478 5880 ntAPPRIS P1 TSL 2 BASIC16.85■□□□□ 0.29
VPS4AQ9UN37 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC16.85■□□□□ 0.29
VPS4AQ9UN37 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC16.85■□□□□ 0.29
VPS4AQ9UN37 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
VPS4AQ9UN37 TMEM132E-201ENST00000321639 5631 ntAPPRIS ALT2 TSL 5 BASIC16.85■□□□□ 0.29
VPS4AQ9UN37 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC16.85■□□□□ 0.29
VPS4AQ9UN37 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
VPS4AQ9UN37 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
VPS4AQ9UN37 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
VPS4AQ9UN37 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC16.85■□□□□ 0.29
VPS4AQ9UN37 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC16.85■□□□□ 0.29
VPS4AQ9UN37 SAPCD2P3-201ENST00000455031 850 ntBASIC16.85■□□□□ 0.29
VPS4AQ9UN37 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
VPS4AQ9UN37 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC16.85■□□□□ 0.29
VPS4AQ9UN37 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC16.85■□□□□ 0.29
VPS4AQ9UN37 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
VPS4AQ9UN37 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC16.85■□□□□ 0.29
VPS4AQ9UN37 LINC01451-201ENST00000623792 534 ntBASIC16.85■□□□□ 0.29
VPS4AQ9UN37 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC16.85■□□□□ 0.29
VPS4AQ9UN37 UBC-206ENST00000538617 1303 ntTSL 5 BASIC16.85■□□□□ 0.29
VPS4AQ9UN37 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC16.85■□□□□ 0.29
VPS4AQ9UN37 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC16.85■□□□□ 0.29
VPS4AQ9UN37 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
VPS4AQ9UN37 ZBTB7C-201ENST00000535628 4818 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
VPS4AQ9UN37 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
VPS4AQ9UN37 DHRS7B-206ENST00000579303 1479 ntAPPRIS ALT1 TSL 5 BASIC16.85■□□□□ 0.29
VPS4AQ9UN37 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC16.85■□□□□ 0.29
VPS4AQ9UN37 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC16.85■□□□□ 0.29
VPS4AQ9UN37 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
VPS4AQ9UN37 AC022211.2-201ENST00000585075 2527 ntBASIC16.85■□□□□ 0.29
VPS4AQ9UN37 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC16.84■□□□□ 0.29
VPS4AQ9UN37 ASB1-201ENST00000264607 6994 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
VPS4AQ9UN37 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC16.84■□□□□ 0.29
VPS4AQ9UN37 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
VPS4AQ9UN37 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
VPS4AQ9UN37 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC16.84■□□□□ 0.29
VPS4AQ9UN37 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC16.84■□□□□ 0.29
VPS4AQ9UN37 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
VPS4AQ9UN37 ZBTB5-201ENST00000307750 4627 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
VPS4AQ9UN37 NTRK2-207ENST00000376214 5608 ntAPPRIS P3 TSL 5 BASIC16.84■□□□□ 0.29
VPS4AQ9UN37 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
VPS4AQ9UN37 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
VPS4AQ9UN37 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC16.84■□□□□ 0.29
VPS4AQ9UN37 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
VPS4AQ9UN37 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC16.84■□□□□ 0.29
VPS4AQ9UN37 BOC-212ENST00000485230 2173 ntTSL 2 BASIC16.84■□□□□ 0.29
VPS4AQ9UN37 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC16.84■□□□□ 0.29
VPS4AQ9UN37 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 86 ms