Protein–RNA interactions for Protein: Q9NP79

VTA1, Vacuolar protein sorting-associated protein VTA1 homolog, humanhuman

Predictions only

Length 307 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VTA1Q9NP79 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
VTA1Q9NP79 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC19.32■□□□□ 0.68
VTA1Q9NP79 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC19.32■□□□□ 0.68
VTA1Q9NP79 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC19.32■□□□□ 0.68
VTA1Q9NP79 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC19.32■□□□□ 0.68
VTA1Q9NP79 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC19.32■□□□□ 0.68
VTA1Q9NP79 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
VTA1Q9NP79 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC19.32■□□□□ 0.68
VTA1Q9NP79 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
VTA1Q9NP79 RNASEK-207ENST00000552842 595 ntTSL 3 BASIC19.32■□□□□ 0.68
VTA1Q9NP79 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
VTA1Q9NP79 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC19.32■□□□□ 0.68
VTA1Q9NP79 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
VTA1Q9NP79 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
VTA1Q9NP79 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC19.32■□□□□ 0.68
VTA1Q9NP79 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC19.32■□□□□ 0.68
VTA1Q9NP79 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
VTA1Q9NP79 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
VTA1Q9NP79 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
VTA1Q9NP79 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC19.31■□□□□ 0.68
VTA1Q9NP79 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
VTA1Q9NP79 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
VTA1Q9NP79 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
VTA1Q9NP79 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC19.31■□□□□ 0.68
VTA1Q9NP79 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC19.31■□□□□ 0.68
VTA1Q9NP79 LINC01264-201ENST00000431395 500 ntTSL 3 BASIC19.31■□□□□ 0.68
VTA1Q9NP79 SLC25A6P5-201ENST00000435663 894 ntBASIC19.31■□□□□ 0.68
VTA1Q9NP79 AC092809.2-202ENST00000436706 790 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
VTA1Q9NP79 AC140658.5-201ENST00000438532 169 ntBASIC19.31■□□□□ 0.68
VTA1Q9NP79 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
VTA1Q9NP79 OR10S1-201ENST00000531945 1121 ntAPPRIS P2 BASIC19.31■□□□□ 0.68
VTA1Q9NP79 GPR42-202ENST00000597214 1182 ntAPPRIS P1 BASIC19.31■□□□□ 0.68
VTA1Q9NP79 AC010735.2-201ENST00000607970 584 ntTSL 4 BASIC19.31■□□□□ 0.68
VTA1Q9NP79 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
VTA1Q9NP79 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC19.31■□□□□ 0.68
VTA1Q9NP79 OR10S1-202ENST00000641123 1121 ntAPPRIS ALT2 BASIC19.31■□□□□ 0.68
VTA1Q9NP79 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC19.31■□□□□ 0.68
VTA1Q9NP79 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
VTA1Q9NP79 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC19.31■□□□□ 0.68
VTA1Q9NP79 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
VTA1Q9NP79 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC19.31■□□□□ 0.68
VTA1Q9NP79 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
VTA1Q9NP79 ERLIN1-203ENST00000421367 5792 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
VTA1Q9NP79 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
VTA1Q9NP79 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC19.31■□□□□ 0.68
VTA1Q9NP79 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC19.31■□□□□ 0.68
VTA1Q9NP79 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
VTA1Q9NP79 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC19.31■□□□□ 0.68
VTA1Q9NP79 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC19.3■□□□□ 0.68
VTA1Q9NP79 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
VTA1Q9NP79 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC19.3■□□□□ 0.68
VTA1Q9NP79 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC19.3■□□□□ 0.68
VTA1Q9NP79 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
VTA1Q9NP79 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC19.3■□□□□ 0.68
VTA1Q9NP79 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
VTA1Q9NP79 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC19.3■□□□□ 0.68
VTA1Q9NP79 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
VTA1Q9NP79 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
VTA1Q9NP79 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC19.3■□□□□ 0.68
VTA1Q9NP79 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
VTA1Q9NP79 AC023141.5-201ENST00000458585 616 ntBASIC19.3■□□□□ 0.68
VTA1Q9NP79 NDUFB2-202ENST00000460088 420 ntTSL 3 BASIC19.3■□□□□ 0.68
VTA1Q9NP79 HLA-J-203ENST00000494367 1087 ntBASIC19.3■□□□□ 0.68
VTA1Q9NP79 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
VTA1Q9NP79 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC19.3■□□□□ 0.68
VTA1Q9NP79 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC19.3■□□□□ 0.68
VTA1Q9NP79 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC19.3■□□□□ 0.68
VTA1Q9NP79 AC004449.1-201ENST00000564240 433 ntBASIC19.3■□□□□ 0.68
VTA1Q9NP79 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
VTA1Q9NP79 BSG-214ENST00000614867 960 ntTSL 3 BASIC19.3■□□□□ 0.68
VTA1Q9NP79 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC19.3■□□□□ 0.68
VTA1Q9NP79 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
VTA1Q9NP79 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
VTA1Q9NP79 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
VTA1Q9NP79 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC19.3■□□□□ 0.68
VTA1Q9NP79 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC19.3■□□□□ 0.68
VTA1Q9NP79 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC19.3■□□□□ 0.68
VTA1Q9NP79 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC19.3■□□□□ 0.68
VTA1Q9NP79 HNRNPRP1-201ENST00000453465 1695 ntBASIC19.3■□□□□ 0.68
VTA1Q9NP79 ARL5A-201ENST00000295087 5326 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
VTA1Q9NP79 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
VTA1Q9NP79 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
VTA1Q9NP79 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
VTA1Q9NP79 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
VTA1Q9NP79 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
VTA1Q9NP79 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC19.29■□□□□ 0.68
VTA1Q9NP79 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC19.29■□□□□ 0.68
VTA1Q9NP79 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC19.29■□□□□ 0.68
VTA1Q9NP79 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
VTA1Q9NP79 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
VTA1Q9NP79 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
VTA1Q9NP79 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
VTA1Q9NP79 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
VTA1Q9NP79 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
VTA1Q9NP79 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
VTA1Q9NP79 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC19.29■□□□□ 0.68
VTA1Q9NP79 CBR1-202ENST00000399191 838 ntTSL 3 BASIC19.29■□□□□ 0.68
VTA1Q9NP79 AL355306.1-201ENST00000415580 579 ntBASIC19.29■□□□□ 0.68
VTA1Q9NP79 SPINK2-203ENST00000506738 763 ntAPPRIS ALT2 TSL 2 BASIC19.29■□□□□ 0.68
VTA1Q9NP79 GATB-205ENST00000508611 605 ntTSL 2 BASIC19.29■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 64.8 ms