Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
TRAIPQ9BWF2 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC19.04■□□□□ 0.64
TRAIPQ9BWF2 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC19.04■□□□□ 0.64
TRAIPQ9BWF2 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC19.04■□□□□ 0.64
TRAIPQ9BWF2 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
TRAIPQ9BWF2 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
TRAIPQ9BWF2 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
TRAIPQ9BWF2 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC19.04■□□□□ 0.64
TRAIPQ9BWF2 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
TRAIPQ9BWF2 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC19.04■□□□□ 0.64
TRAIPQ9BWF2 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC19.04■□□□□ 0.64
TRAIPQ9BWF2 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC19.04■□□□□ 0.64
TRAIPQ9BWF2 HS6ST1P1-201ENST00000481504 1234 ntBASIC19.04■□□□□ 0.64
TRAIPQ9BWF2 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC19.04■□□□□ 0.64
TRAIPQ9BWF2 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
TRAIPQ9BWF2 RNA5SP416-201ENST00000516838 111 ntBASIC19.04■□□□□ 0.64
TRAIPQ9BWF2 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
TRAIPQ9BWF2 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC19.04■□□□□ 0.64
TRAIPQ9BWF2 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC19.04■□□□□ 0.64
TRAIPQ9BWF2 AC009336.1-201ENST00000608941 1553 ntBASIC19.04■□□□□ 0.64
TRAIPQ9BWF2 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
TRAIPQ9BWF2 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC19.04■□□□□ 0.64
TRAIPQ9BWF2 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
TRAIPQ9BWF2 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC19.04■□□□□ 0.64
TRAIPQ9BWF2 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
TRAIPQ9BWF2 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
TRAIPQ9BWF2 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC19.03■□□□□ 0.64
TRAIPQ9BWF2 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC19.03■□□□□ 0.64
TRAIPQ9BWF2 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
TRAIPQ9BWF2 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC19.03■□□□□ 0.64
TRAIPQ9BWF2 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC19.03■□□□□ 0.64
TRAIPQ9BWF2 AC006504.4-201ENST00000592118 1568 ntBASIC19.03■□□□□ 0.64
TRAIPQ9BWF2 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
TRAIPQ9BWF2 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC19.03■□□□□ 0.64
TRAIPQ9BWF2 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
TRAIPQ9BWF2 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
TRAIPQ9BWF2 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC19.03■□□□□ 0.64
TRAIPQ9BWF2 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC19.03■□□□□ 0.64
TRAIPQ9BWF2 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC19.03■□□□□ 0.64
TRAIPQ9BWF2 AC108751.1-201ENST00000490852 363 ntBASIC19.03■□□□□ 0.64
TRAIPQ9BWF2 STK19B-204ENST00000512515 211 ntBASIC19.03■□□□□ 0.64
TRAIPQ9BWF2 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC19.03■□□□□ 0.64
TRAIPQ9BWF2 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC19.03■□□□□ 0.64
TRAIPQ9BWF2 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC19.03■□□□□ 0.64
TRAIPQ9BWF2 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
TRAIPQ9BWF2 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC19.03■□□□□ 0.64
TRAIPQ9BWF2 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC19.03■□□□□ 0.64
TRAIPQ9BWF2 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
TRAIPQ9BWF2 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC19.03■□□□□ 0.64
TRAIPQ9BWF2 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
TRAIPQ9BWF2 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
TRAIPQ9BWF2 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
TRAIPQ9BWF2 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC19.03■□□□□ 0.64
TRAIPQ9BWF2 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
TRAIPQ9BWF2 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC19.03■□□□□ 0.64
TRAIPQ9BWF2 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
TRAIPQ9BWF2 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
TRAIPQ9BWF2 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC19.03■□□□□ 0.64
TRAIPQ9BWF2 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC19.03■□□□□ 0.64
TRAIPQ9BWF2 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC19.03■□□□□ 0.64
TRAIPQ9BWF2 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
TRAIPQ9BWF2 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
TRAIPQ9BWF2 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC19.02■□□□□ 0.64
TRAIPQ9BWF2 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC19.02■□□□□ 0.64
TRAIPQ9BWF2 KLHL31-201ENST00000370905 5743 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
TRAIPQ9BWF2 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC19.02■□□□□ 0.64
TRAIPQ9BWF2 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC19.02■□□□□ 0.64
TRAIPQ9BWF2 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
TRAIPQ9BWF2 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC19.02■□□□□ 0.64
TRAIPQ9BWF2 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC19.02■□□□□ 0.64
TRAIPQ9BWF2 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
TRAIPQ9BWF2 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
TRAIPQ9BWF2 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC19.02■□□□□ 0.64
TRAIPQ9BWF2 MIR1233-2-201ENST00000408138 82 ntBASIC19.02■□□□□ 0.64
TRAIPQ9BWF2 MIR1233-1-201ENST00000408722 82 ntBASIC19.02■□□□□ 0.64
TRAIPQ9BWF2 PDE6D-202ENST00000409772 672 ntTSL 3 BASIC19.02■□□□□ 0.64
TRAIPQ9BWF2 ELK2BP-201ENST00000415014 1224 ntBASIC19.02■□□□□ 0.64
TRAIPQ9BWF2 AC004832.2-201ENST00000426397 482 ntBASIC19.02■□□□□ 0.64
TRAIPQ9BWF2 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC19.02■□□□□ 0.64
TRAIPQ9BWF2 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC19.02■□□□□ 0.64
TRAIPQ9BWF2 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC19.02■□□□□ 0.64
TRAIPQ9BWF2 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC19.02■□□□□ 0.64
TRAIPQ9BWF2 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC19.02■□□□□ 0.64
TRAIPQ9BWF2 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC19.02■□□□□ 0.64
TRAIPQ9BWF2 MNT-208ENST00000575394 606 ntTSL 4 BASIC19.02■□□□□ 0.64
TRAIPQ9BWF2 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC19.02■□□□□ 0.64
TRAIPQ9BWF2 AC008667.4-201ENST00000607370 168 ntBASIC19.02■□□□□ 0.64
TRAIPQ9BWF2 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
TRAIPQ9BWF2 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC19.02■□□□□ 0.64
TRAIPQ9BWF2 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC19.02■□□□□ 0.64
TRAIPQ9BWF2 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
TRAIPQ9BWF2 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
TRAIPQ9BWF2 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC19.02■□□□□ 0.64
TRAIPQ9BWF2 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC19.02■□□□□ 0.63
TRAIPQ9BWF2 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
TRAIPQ9BWF2 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC19.02■□□□□ 0.63
TRAIPQ9BWF2 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
TRAIPQ9BWF2 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC19.02■□□□□ 0.63
TRAIPQ9BWF2 PODN-203ENST00000395871 2744 ntTSL 5 BASIC19.02■□□□□ 0.63
TRAIPQ9BWF2 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 36.4 ms