Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.03
NKX3-1Q99801 CD81-212ENST00000526072 1172 ntTSL 5 BASIC15.21■□□□□ 0.03
NKX3-1Q99801 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.03
NKX3-1Q99801 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC15.21■□□□□ 0.03
NKX3-1Q99801 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC15.21■□□□□ 0.03
NKX3-1Q99801 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
NKX3-1Q99801 AL391807.1-203ENST00000604392 2365 ntBASIC15.21■□□□□ 0.03
NKX3-1Q99801 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
NKX3-1Q99801 TBL3-205ENST00000568546 6803 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.03
NKX3-1Q99801 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
NKX3-1Q99801 TRIM9-202ENST00000338969 3312 ntTSL 2 BASIC15.21■□□□□ 0.03
NKX3-1Q99801 CLEC18C-201ENST00000314151 1934 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.02
NKX3-1Q99801 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
NKX3-1Q99801 CLEC18A-208ENST00000568461 1934 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.02
NKX3-1Q99801 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
NKX3-1Q99801 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
NKX3-1Q99801 ZMIZ1-201ENST00000334512 7546 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.02
NKX3-1Q99801 CYTH2-204ENST00000452733 4780 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.02
NKX3-1Q99801 MXD1-201ENST00000264444 5587 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
NKX3-1Q99801 MAPK14-201ENST00000229794 3779 ntAPPRIS P5 TSL 1 (best) BASIC15.21■□□□□ 0.02
NKX3-1Q99801 RNF216P1-203ENST00000404404 2427 ntBASIC15.21■□□□□ 0.02
NKX3-1Q99801 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
NKX3-1Q99801 TMC7-201ENST00000304381 3640 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
NKX3-1Q99801 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC15.2■□□□□ 0.02
NKX3-1Q99801 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
NKX3-1Q99801 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
NKX3-1Q99801 NOMO1-207ENST00000610363 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
NKX3-1Q99801 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC15.2■□□□□ 0.02
NKX3-1Q99801 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC15.2■□□□□ 0.02
NKX3-1Q99801 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC15.2■□□□□ 0.02
NKX3-1Q99801 AC092053.1-201ENST00000605787 1936 ntBASIC15.2■□□□□ 0.02
NKX3-1Q99801 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
NKX3-1Q99801 PAX3-201ENST00000258387 958 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
NKX3-1Q99801 ARMC10P1-201ENST00000313754 855 ntBASIC15.2■□□□□ 0.02
NKX3-1Q99801 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC15.2■□□□□ 0.02
NKX3-1Q99801 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
NKX3-1Q99801 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC15.2■□□□□ 0.02
NKX3-1Q99801 SPDYE15P-201ENST00000424157 909 ntBASIC15.2■□□□□ 0.02
NKX3-1Q99801 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
NKX3-1Q99801 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC15.2■□□□□ 0.02
NKX3-1Q99801 RASA4DP-201ENST00000460726 1199 ntBASIC15.2■□□□□ 0.02
NKX3-1Q99801 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC15.2■□□□□ 0.02
NKX3-1Q99801 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC15.2■□□□□ 0.02
NKX3-1Q99801 TEN1-204ENST00000588202 862 ntTSL 3 BASIC15.2■□□□□ 0.02
NKX3-1Q99801 AL136038.4-201ENST00000603606 1261 ntBASIC15.2■□□□□ 0.02
NKX3-1Q99801 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
NKX3-1Q99801 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC15.2■□□□□ 0.02
NKX3-1Q99801 DAGLB-202ENST00000425398 2044 ntTSL 2 BASIC15.2■□□□□ 0.02
NKX3-1Q99801 HNRNPU-205ENST00000444376 6827 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
NKX3-1Q99801 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC15.2■□□□□ 0.02
NKX3-1Q99801 PDE12-202ENST00000487257 3040 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
NKX3-1Q99801 ANTXR1-201ENST00000303714 5859 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
NKX3-1Q99801 MAPK8IP2-202ENST00000329492 3381 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
NKX3-1Q99801 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
NKX3-1Q99801 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
NKX3-1Q99801 LITAF-209ENST00000571688 2632 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
NKX3-1Q99801 KDM4B-211ENST00000611640 5703 ntTSL 5 BASIC15.2■□□□□ 0.02
NKX3-1Q99801 CDS1-201ENST00000295887 4461 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
NKX3-1Q99801 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
NKX3-1Q99801 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
NKX3-1Q99801 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
NKX3-1Q99801 AC046185.3-201ENST00000623228 1824 ntBASIC15.2■□□□□ 0.02
NKX3-1Q99801 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
NKX3-1Q99801 BICD2-201ENST00000356884 6427 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
NKX3-1Q99801 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC15.19■□□□□ 0.02
NKX3-1Q99801 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
NKX3-1Q99801 SLC27A6-201ENST00000262462 3219 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
NKX3-1Q99801 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
NKX3-1Q99801 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
NKX3-1Q99801 PRX-202ENST00000324001 4855 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
NKX3-1Q99801 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC15.19■□□□□ 0.02
NKX3-1Q99801 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC15.19■□□□□ 0.02
NKX3-1Q99801 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
NKX3-1Q99801 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
NKX3-1Q99801 TRIM11-201ENST00000284551 2715 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
NKX3-1Q99801 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
NKX3-1Q99801 GBA2-202ENST00000378094 3757 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
NKX3-1Q99801 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
NKX3-1Q99801 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
NKX3-1Q99801 MAP3K20-203ENST00000409176 2572 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
NKX3-1Q99801 AC011270.2-201ENST00000624293 2550 ntBASIC15.19■□□□□ 0.02
NKX3-1Q99801 SLC9A5-201ENST00000299798 3736 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
NKX3-1Q99801 CNOT6-207ENST00000618123 6250 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
NKX3-1Q99801 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC15.19■□□□□ 0.02
NKX3-1Q99801 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
NKX3-1Q99801 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC15.19■□□□□ 0.02
NKX3-1Q99801 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC15.19■□□□□ 0.02
NKX3-1Q99801 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
NKX3-1Q99801 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC15.19■□□□□ 0.02
NKX3-1Q99801 DDX43P3-201ENST00000441064 443 ntBASIC15.19■□□□□ 0.02
NKX3-1Q99801 AC113404.2-201ENST00000507884 177 ntBASIC15.19■□□□□ 0.02
NKX3-1Q99801 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC15.19■□□□□ 0.02
NKX3-1Q99801 AL441883.1-201ENST00000566170 1045 ntBASIC15.19■□□□□ 0.02
NKX3-1Q99801 AC008687.5-201ENST00000593746 558 ntBASIC15.19■□□□□ 0.02
NKX3-1Q99801 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC15.19■□□□□ 0.02
NKX3-1Q99801 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
NKX3-1Q99801 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC15.19■□□□□ 0.02
NKX3-1Q99801 AL590326.2-201ENST00000625139 305 ntBASIC15.19■□□□□ 0.02
NKX3-1Q99801 DGUOK-208ENST00000629438 1029 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
NKX3-1Q99801 TLE3-212ENST00000558201 2766 ntTSL 5 BASIC15.19■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 40.8 ms