Protein–RNA interactions for Protein: Q8TBC3

SHKBP1, SH3KBP1-binding protein 1, humanhuman

Predictions only

Length 707 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1Q8TBC3 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
SHKBP1Q8TBC3 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC18.23■□□□□ 0.51
SHKBP1Q8TBC3 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SHKBP1Q8TBC3 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC18.23■□□□□ 0.51
SHKBP1Q8TBC3 AC009336.1-201ENST00000608941 1553 ntBASIC18.23■□□□□ 0.51
SHKBP1Q8TBC3 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SHKBP1Q8TBC3 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SHKBP1Q8TBC3 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SHKBP1Q8TBC3 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SHKBP1Q8TBC3 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC18.23■□□□□ 0.51
SHKBP1Q8TBC3 COA5-202ENST00000409997 557 ntTSL 4 BASIC18.23■□□□□ 0.51
SHKBP1Q8TBC3 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC18.23■□□□□ 0.51
SHKBP1Q8TBC3 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC18.23■□□□□ 0.51
SHKBP1Q8TBC3 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC18.23■□□□□ 0.51
SHKBP1Q8TBC3 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC18.23■□□□□ 0.51
SHKBP1Q8TBC3 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC18.23■□□□□ 0.51
SHKBP1Q8TBC3 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC18.23■□□□□ 0.51
SHKBP1Q8TBC3 AC126696.3-201ENST00000563993 575 ntTSL 4 BASIC18.23■□□□□ 0.51
SHKBP1Q8TBC3 COX5A-206ENST00000568783 571 ntTSL 3 BASIC18.23■□□□□ 0.51
SHKBP1Q8TBC3 AC004790.2-201ENST00000623588 572 ntBASIC18.23■□□□□ 0.51
SHKBP1Q8TBC3 AC080080.1-201ENST00000625121 2420 ntBASIC18.23■□□□□ 0.51
SHKBP1Q8TBC3 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC18.23■□□□□ 0.51
SHKBP1Q8TBC3 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
SHKBP1Q8TBC3 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
SHKBP1Q8TBC3 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SHKBP1Q8TBC3 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SHKBP1Q8TBC3 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
SHKBP1Q8TBC3 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
SHKBP1Q8TBC3 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC18.23■□□□□ 0.51
SHKBP1Q8TBC3 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
SHKBP1Q8TBC3 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC18.23■□□□□ 0.51
SHKBP1Q8TBC3 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
SHKBP1Q8TBC3 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
SHKBP1Q8TBC3 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SHKBP1Q8TBC3 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
SHKBP1Q8TBC3 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
SHKBP1Q8TBC3 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC18.22■□□□□ 0.51
SHKBP1Q8TBC3 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
SHKBP1Q8TBC3 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC18.22■□□□□ 0.51
SHKBP1Q8TBC3 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC18.22■□□□□ 0.51
SHKBP1Q8TBC3 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC18.22■□□□□ 0.51
SHKBP1Q8TBC3 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC18.22■□□□□ 0.51
SHKBP1Q8TBC3 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC18.22■□□□□ 0.51
SHKBP1Q8TBC3 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC18.22■□□□□ 0.51
SHKBP1Q8TBC3 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
SHKBP1Q8TBC3 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
SHKBP1Q8TBC3 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
SHKBP1Q8TBC3 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
SHKBP1Q8TBC3 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
SHKBP1Q8TBC3 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC18.22■□□□□ 0.51
SHKBP1Q8TBC3 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC18.22■□□□□ 0.51
SHKBP1Q8TBC3 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC18.22■□□□□ 0.51
SHKBP1Q8TBC3 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
SHKBP1Q8TBC3 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
SHKBP1Q8TBC3 HCG4B-203ENST00000450128 991 ntBASIC18.22■□□□□ 0.51
SHKBP1Q8TBC3 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC18.22■□□□□ 0.51
SHKBP1Q8TBC3 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC18.22■□□□□ 0.51
SHKBP1Q8TBC3 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC18.22■□□□□ 0.51
SHKBP1Q8TBC3 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC18.22■□□□□ 0.51
SHKBP1Q8TBC3 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC18.22■□□□□ 0.51
SHKBP1Q8TBC3 AC018845.2-201ENST00000568326 409 ntBASIC18.22■□□□□ 0.51
SHKBP1Q8TBC3 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC18.22■□□□□ 0.51
SHKBP1Q8TBC3 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
SHKBP1Q8TBC3 AL805961.1-202ENST00000641562 540 ntBASIC18.22■□□□□ 0.51
SHKBP1Q8TBC3 AC092865.6-201ENST00000642101 219 ntBASIC18.22■□□□□ 0.51
SHKBP1Q8TBC3 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
SHKBP1Q8TBC3 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
SHKBP1Q8TBC3 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
SHKBP1Q8TBC3 AC097637.2-201ENST00000624096 1997 ntBASIC18.22■□□□□ 0.51
SHKBP1Q8TBC3 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
SHKBP1Q8TBC3 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC18.22■□□□□ 0.51
SHKBP1Q8TBC3 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
SHKBP1Q8TBC3 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC18.22■□□□□ 0.51
SHKBP1Q8TBC3 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC18.22■□□□□ 0.51
SHKBP1Q8TBC3 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
SHKBP1Q8TBC3 STK4-201ENST00000372801 2038 ntTSL 2 BASIC18.22■□□□□ 0.51
SHKBP1Q8TBC3 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC18.21■□□□□ 0.51
SHKBP1Q8TBC3 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC18.21■□□□□ 0.51
SHKBP1Q8TBC3 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
SHKBP1Q8TBC3 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
SHKBP1Q8TBC3 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC18.21■□□□□ 0.51
SHKBP1Q8TBC3 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
SHKBP1Q8TBC3 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.51
SHKBP1Q8TBC3 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
SHKBP1Q8TBC3 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC18.21■□□□□ 0.51
SHKBP1Q8TBC3 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
SHKBP1Q8TBC3 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
SHKBP1Q8TBC3 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC18.21■□□□□ 0.51
SHKBP1Q8TBC3 MCCD1P2-201ENST00000423228 335 ntBASIC18.21■□□□□ 0.51
SHKBP1Q8TBC3 PRSS29P-201ENST00000440800 595 ntBASIC18.21■□□□□ 0.51
SHKBP1Q8TBC3 AC002558.1-201ENST00000488906 803 ntBASIC18.21■□□□□ 0.51
SHKBP1Q8TBC3 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC18.21■□□□□ 0.51
SHKBP1Q8TBC3 TRMT112-202ENST00000535126 704 ntTSL 2 BASIC18.21■□□□□ 0.51
SHKBP1Q8TBC3 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC18.21■□□□□ 0.51
SHKBP1Q8TBC3 SEC11C-205ENST00000588875 718 ntTSL 2 BASIC18.21■□□□□ 0.51
SHKBP1Q8TBC3 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
SHKBP1Q8TBC3 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.51
SHKBP1Q8TBC3 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.51
SHKBP1Q8TBC3 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
SHKBP1Q8TBC3 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 28.9 ms