Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC17.43■□□□□ 0.38
HDDC3Q8N4P3 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC17.43■□□□□ 0.38
HDDC3Q8N4P3 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC17.43■□□□□ 0.38
HDDC3Q8N4P3 CACNA1A-201ENST00000360228 8627 ntAPPRIS P4 TSL 1 (best) BASIC17.42■□□□□ 0.38
HDDC3Q8N4P3 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
HDDC3Q8N4P3 AMT-250ENST00000637682 1823 ntTSL 5 BASIC17.42■□□□□ 0.38
HDDC3Q8N4P3 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
HDDC3Q8N4P3 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
HDDC3Q8N4P3 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC17.42■□□□□ 0.38
HDDC3Q8N4P3 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC17.42■□□□□ 0.38
HDDC3Q8N4P3 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
HDDC3Q8N4P3 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
HDDC3Q8N4P3 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
HDDC3Q8N4P3 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
HDDC3Q8N4P3 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
HDDC3Q8N4P3 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC17.42■□□□□ 0.38
HDDC3Q8N4P3 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC17.42■□□□□ 0.38
HDDC3Q8N4P3 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
HDDC3Q8N4P3 MIPEPP3-202ENST00000424756 347 ntTSL 3 BASIC17.42■□□□□ 0.38
HDDC3Q8N4P3 CNN2P11-201ENST00000429351 262 ntBASIC17.42■□□□□ 0.38
HDDC3Q8N4P3 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC17.42■□□□□ 0.38
HDDC3Q8N4P3 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC17.42■□□□□ 0.38
HDDC3Q8N4P3 YBX1P5-201ENST00000509441 847 ntBASIC17.42■□□□□ 0.38
HDDC3Q8N4P3 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
HDDC3Q8N4P3 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC17.42■□□□□ 0.38
HDDC3Q8N4P3 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC17.42■□□□□ 0.38
HDDC3Q8N4P3 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
HDDC3Q8N4P3 COMP-202ENST00000425807 2292 ntTSL 2 BASIC17.42■□□□□ 0.38
HDDC3Q8N4P3 NUP153-202ENST00000537253 6030 ntAPPRIS ALT2 TSL 2 BASIC17.42■□□□□ 0.38
HDDC3Q8N4P3 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
HDDC3Q8N4P3 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC17.42■□□□□ 0.38
HDDC3Q8N4P3 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
HDDC3Q8N4P3 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
HDDC3Q8N4P3 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
HDDC3Q8N4P3 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
HDDC3Q8N4P3 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
HDDC3Q8N4P3 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
HDDC3Q8N4P3 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
HDDC3Q8N4P3 PPIC-201ENST00000306442 1380 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
HDDC3Q8N4P3 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC17.41■□□□□ 0.38
HDDC3Q8N4P3 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
HDDC3Q8N4P3 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC17.41■□□□□ 0.38
HDDC3Q8N4P3 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC17.41■□□□□ 0.38
HDDC3Q8N4P3 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
HDDC3Q8N4P3 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC17.41■□□□□ 0.38
HDDC3Q8N4P3 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
HDDC3Q8N4P3 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
HDDC3Q8N4P3 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
HDDC3Q8N4P3 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
HDDC3Q8N4P3 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
HDDC3Q8N4P3 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
HDDC3Q8N4P3 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC17.41■□□□□ 0.38
HDDC3Q8N4P3 PRSS29P-201ENST00000440800 595 ntBASIC17.41■□□□□ 0.38
HDDC3Q8N4P3 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC17.41■□□□□ 0.38
HDDC3Q8N4P3 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC17.41■□□□□ 0.38
HDDC3Q8N4P3 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC17.41■□□□□ 0.38
HDDC3Q8N4P3 AC011467.4-201ENST00000594891 528 ntBASIC17.41■□□□□ 0.38
HDDC3Q8N4P3 ORC5-208ENST00000626700 344 ntTSL 3 BASIC17.41■□□□□ 0.38
HDDC3Q8N4P3 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
HDDC3Q8N4P3 AC046185.3-201ENST00000623228 1824 ntBASIC17.41■□□□□ 0.38
HDDC3Q8N4P3 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
HDDC3Q8N4P3 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC17.41■□□□□ 0.38
HDDC3Q8N4P3 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
HDDC3Q8N4P3 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
HDDC3Q8N4P3 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
HDDC3Q8N4P3 IL6R-202ENST00000368485 5914 ntAPPRIS P4 TSL 1 (best) BASIC17.41■□□□□ 0.38
HDDC3Q8N4P3 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
HDDC3Q8N4P3 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
HDDC3Q8N4P3 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
HDDC3Q8N4P3 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
HDDC3Q8N4P3 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC17.4■□□□□ 0.38
HDDC3Q8N4P3 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC17.4■□□□□ 0.38
HDDC3Q8N4P3 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC17.4■□□□□ 0.38
HDDC3Q8N4P3 ENC1-201ENST00000302351 5520 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
HDDC3Q8N4P3 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
HDDC3Q8N4P3 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
HDDC3Q8N4P3 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
HDDC3Q8N4P3 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC17.4■□□□□ 0.38
HDDC3Q8N4P3 MRPS18A-202ENST00000372133 1062 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
HDDC3Q8N4P3 AP002414.1-201ENST00000391405 1147 ntBASIC17.4■□□□□ 0.38
HDDC3Q8N4P3 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC17.4■□□□□ 0.38
HDDC3Q8N4P3 MRPL20P1-201ENST00000400819 433 ntBASIC17.4■□□□□ 0.38
HDDC3Q8N4P3 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC17.4■□□□□ 0.38
HDDC3Q8N4P3 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC17.4■□□□□ 0.38
HDDC3Q8N4P3 FAM8A3P-201ENST00000427218 844 ntBASIC17.4■□□□□ 0.38
HDDC3Q8N4P3 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC17.4■□□□□ 0.38
HDDC3Q8N4P3 OST4-202ENST00000447619 458 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
HDDC3Q8N4P3 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
HDDC3Q8N4P3 AP002472.1-201ENST00000577490 586 ntBASIC17.4■□□□□ 0.38
HDDC3Q8N4P3 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC17.4■□□□□ 0.38
HDDC3Q8N4P3 C20orf181-201ENST00000623918 480 ntBASIC17.4■□□□□ 0.38
HDDC3Q8N4P3 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC17.4■□□□□ 0.38
HDDC3Q8N4P3 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
HDDC3Q8N4P3 SERHL2-203ENST00000340239 1315 ntTSL 5 BASIC17.4■□□□□ 0.38
HDDC3Q8N4P3 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
HDDC3Q8N4P3 RHOBTB1-201ENST00000337910 4473 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
HDDC3Q8N4P3 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC17.4■□□□□ 0.38
HDDC3Q8N4P3 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
HDDC3Q8N4P3 RNF169-201ENST00000299563 7823 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
HDDC3Q8N4P3 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC17.39■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 29.4 ms