Protein–RNA interactions for Protein: Q8IWA6

CCDC60, Coiled-coil domain-containing protein 60, humanhuman

Predicted RBP Predictions only

Length 550 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC60Q8IWA6 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC19.26■□□□□ 0.67
CCDC60Q8IWA6 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CCDC60Q8IWA6 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
CCDC60Q8IWA6 GNAS-203ENST00000306120 1878 ntBASIC19.26■□□□□ 0.67
CCDC60Q8IWA6 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC19.26■□□□□ 0.67
CCDC60Q8IWA6 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
CCDC60Q8IWA6 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
CCDC60Q8IWA6 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
CCDC60Q8IWA6 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CCDC60Q8IWA6 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CCDC60Q8IWA6 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
CCDC60Q8IWA6 ANKS1A-201ENST00000360359 6347 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CCDC60Q8IWA6 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
CCDC60Q8IWA6 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
CCDC60Q8IWA6 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CCDC60Q8IWA6 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
CCDC60Q8IWA6 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC19.25■□□□□ 0.67
CCDC60Q8IWA6 POLD4-207ENST00000531239 584 ntTSL 2 BASIC19.25■□□□□ 0.67
CCDC60Q8IWA6 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC19.25■□□□□ 0.67
CCDC60Q8IWA6 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
CCDC60Q8IWA6 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
CCDC60Q8IWA6 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC19.25■□□□□ 0.67
CCDC60Q8IWA6 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
CCDC60Q8IWA6 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC19.24■□□□□ 0.67
CCDC60Q8IWA6 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CCDC60Q8IWA6 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
CCDC60Q8IWA6 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC19.24■□□□□ 0.67
CCDC60Q8IWA6 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
CCDC60Q8IWA6 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
CCDC60Q8IWA6 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC19.24■□□□□ 0.67
CCDC60Q8IWA6 YBX2P1-201ENST00000394192 760 ntBASIC19.24■□□□□ 0.67
CCDC60Q8IWA6 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC19.24■□□□□ 0.67
CCDC60Q8IWA6 PAWRP1-201ENST00000451083 565 ntBASIC19.24■□□□□ 0.67
CCDC60Q8IWA6 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC19.24■□□□□ 0.67
CCDC60Q8IWA6 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC19.24■□□□□ 0.67
CCDC60Q8IWA6 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC19.24■□□□□ 0.67
CCDC60Q8IWA6 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC19.24■□□□□ 0.67
CCDC60Q8IWA6 AC139530.3-201ENST00000620344 690 ntBASIC19.24■□□□□ 0.67
CCDC60Q8IWA6 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC19.24■□□□□ 0.67
CCDC60Q8IWA6 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC19.24■□□□□ 0.67
CCDC60Q8IWA6 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
CCDC60Q8IWA6 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC19.24■□□□□ 0.67
CCDC60Q8IWA6 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
CCDC60Q8IWA6 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC19.24■□□□□ 0.67
CCDC60Q8IWA6 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC19.24■□□□□ 0.67
CCDC60Q8IWA6 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CCDC60Q8IWA6 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC19.24■□□□□ 0.67
CCDC60Q8IWA6 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
CCDC60Q8IWA6 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CCDC60Q8IWA6 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
CCDC60Q8IWA6 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
CCDC60Q8IWA6 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC19.23■□□□□ 0.67
CCDC60Q8IWA6 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CCDC60Q8IWA6 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CCDC60Q8IWA6 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
CCDC60Q8IWA6 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC19.23■□□□□ 0.67
CCDC60Q8IWA6 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CCDC60Q8IWA6 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CCDC60Q8IWA6 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC19.23■□□□□ 0.67
CCDC60Q8IWA6 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC19.23■□□□□ 0.67
CCDC60Q8IWA6 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
CCDC60Q8IWA6 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
CCDC60Q8IWA6 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC19.23■□□□□ 0.67
CCDC60Q8IWA6 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC19.23■□□□□ 0.67
CCDC60Q8IWA6 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC19.23■□□□□ 0.67
CCDC60Q8IWA6 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
CCDC60Q8IWA6 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC19.23■□□□□ 0.67
CCDC60Q8IWA6 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC19.23■□□□□ 0.67
CCDC60Q8IWA6 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC19.23■□□□□ 0.67
CCDC60Q8IWA6 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC19.23■□□□□ 0.67
CCDC60Q8IWA6 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC19.23■□□□□ 0.67
CCDC60Q8IWA6 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CCDC60Q8IWA6 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC19.23■□□□□ 0.67
CCDC60Q8IWA6 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CCDC60Q8IWA6 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CCDC60Q8IWA6 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC19.23■□□□□ 0.67
CCDC60Q8IWA6 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
CCDC60Q8IWA6 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
CCDC60Q8IWA6 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
CCDC60Q8IWA6 TPR-209ENST00000613151 2478 ntTSL 5 BASIC19.23■□□□□ 0.67
CCDC60Q8IWA6 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
CCDC60Q8IWA6 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC19.22■□□□□ 0.67
CCDC60Q8IWA6 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CCDC60Q8IWA6 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
CCDC60Q8IWA6 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CCDC60Q8IWA6 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC19.22■□□□□ 0.67
CCDC60Q8IWA6 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CCDC60Q8IWA6 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
CCDC60Q8IWA6 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CCDC60Q8IWA6 PLEKHG5-206ENST00000377748 5221 ntAPPRIS ALT2 TSL 2 BASIC19.22■□□□□ 0.67
CCDC60Q8IWA6 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
CCDC60Q8IWA6 PMP22-202ENST00000395936 816 ntTSL 3 BASIC19.22■□□□□ 0.67
CCDC60Q8IWA6 HNRNPA1P28-201ENST00000424481 961 ntBASIC19.22■□□□□ 0.67
CCDC60Q8IWA6 AC004832.2-201ENST00000426397 482 ntBASIC19.22■□□□□ 0.67
CCDC60Q8IWA6 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC19.22■□□□□ 0.67
CCDC60Q8IWA6 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC19.22■□□□□ 0.67
CCDC60Q8IWA6 AC010327.4-202ENST00000591484 748 ntBASIC19.22■□□□□ 0.67
CCDC60Q8IWA6 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC19.22■□□□□ 0.67
CCDC60Q8IWA6 AC010507.1-201ENST00000633895 436 ntBASIC19.22■□□□□ 0.67
CCDC60Q8IWA6 AC092865.6-201ENST00000642101 219 ntBASIC19.22■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 48.8 ms