Protein–RNA interactions for Protein: Q8IVD9

NUDCD3, NudC domain-containing protein 3, humanhuman

Predictions only

Length 361 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUDCD3Q8IVD9 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
NUDCD3Q8IVD9 MYO1D-201ENST00000318217 5563 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
NUDCD3Q8IVD9 FBXO21-201ENST00000330622 2906 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
NUDCD3Q8IVD9 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC17.3■□□□□ 0.36
NUDCD3Q8IVD9 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC17.3■□□□□ 0.36
NUDCD3Q8IVD9 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
NUDCD3Q8IVD9 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
NUDCD3Q8IVD9 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC17.3■□□□□ 0.36
NUDCD3Q8IVD9 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC17.3■□□□□ 0.36
NUDCD3Q8IVD9 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC17.3■□□□□ 0.36
NUDCD3Q8IVD9 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
NUDCD3Q8IVD9 HMGA1P5-201ENST00000412453 271 ntBASIC17.3■□□□□ 0.36
NUDCD3Q8IVD9 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC17.3■□□□□ 0.36
NUDCD3Q8IVD9 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
NUDCD3Q8IVD9 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC17.3■□□□□ 0.36
NUDCD3Q8IVD9 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
NUDCD3Q8IVD9 AC004263.2-201ENST00000617183 678 ntBASIC17.3■□□□□ 0.36
NUDCD3Q8IVD9 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
NUDCD3Q8IVD9 PIGQ-201ENST00000026218 2846 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
NUDCD3Q8IVD9 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC17.3■□□□□ 0.36
NUDCD3Q8IVD9 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
NUDCD3Q8IVD9 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
NUDCD3Q8IVD9 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC17.3■□□□□ 0.36
NUDCD3Q8IVD9 BNC1-201ENST00000345382 4610 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
NUDCD3Q8IVD9 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
NUDCD3Q8IVD9 CCDC187-205ENST00000638797 10126 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
NUDCD3Q8IVD9 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
NUDCD3Q8IVD9 GLOD4-203ENST00000536578 2497 ntTSL 5 BASIC17.29■□□□□ 0.36
NUDCD3Q8IVD9 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC17.29■□□□□ 0.36
NUDCD3Q8IVD9 RNF216P1-203ENST00000404404 2427 ntBASIC17.29■□□□□ 0.36
NUDCD3Q8IVD9 IQCE-212ENST00000476665 2400 ntAPPRIS ALT2 TSL 2 BASIC17.29■□□□□ 0.36
NUDCD3Q8IVD9 WT1-209ENST00000530998 2421 ntTSL 2 BASIC17.29■□□□□ 0.36
NUDCD3Q8IVD9 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
NUDCD3Q8IVD9 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
NUDCD3Q8IVD9 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC17.29■□□□□ 0.36
NUDCD3Q8IVD9 SHTN1-202ENST00000355371 5361 ntAPPRIS ALT1 TSL 2 BASIC17.29■□□□□ 0.36
NUDCD3Q8IVD9 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC17.29■□□□□ 0.36
NUDCD3Q8IVD9 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC17.29■□□□□ 0.36
NUDCD3Q8IVD9 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC17.29■□□□□ 0.36
NUDCD3Q8IVD9 GPX4-207ENST00000589115 812 ntTSL 2 BASIC17.29■□□□□ 0.36
NUDCD3Q8IVD9 TK1-204ENST00000590430 683 ntTSL 3 BASIC17.29■□□□□ 0.36
NUDCD3Q8IVD9 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC17.29■□□□□ 0.36
NUDCD3Q8IVD9 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC17.29■□□□□ 0.36
NUDCD3Q8IVD9 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC17.29■□□□□ 0.36
NUDCD3Q8IVD9 CICP6-201ENST00000457191 2729 ntBASIC17.29■□□□□ 0.36
NUDCD3Q8IVD9 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
NUDCD3Q8IVD9 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC17.29■□□□□ 0.36
NUDCD3Q8IVD9 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
NUDCD3Q8IVD9 ABCB10-201ENST00000344517 3857 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
NUDCD3Q8IVD9 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC17.29■□□□□ 0.36
NUDCD3Q8IVD9 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
NUDCD3Q8IVD9 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC17.29■□□□□ 0.36
NUDCD3Q8IVD9 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
NUDCD3Q8IVD9 MAP3K20-203ENST00000409176 2572 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
NUDCD3Q8IVD9 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
NUDCD3Q8IVD9 C17orf62-201ENST00000306645 2093 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
NUDCD3Q8IVD9 KL-201ENST00000380099 5006 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
NUDCD3Q8IVD9 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
NUDCD3Q8IVD9 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC17.28■□□□□ 0.36
NUDCD3Q8IVD9 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
NUDCD3Q8IVD9 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC17.28■□□□□ 0.36
NUDCD3Q8IVD9 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC17.28■□□□□ 0.36
NUDCD3Q8IVD9 NEO1-206ENST00000558964 4441 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
NUDCD3Q8IVD9 MPIG6B-204ENST00000375809 2396 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
NUDCD3Q8IVD9 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
NUDCD3Q8IVD9 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
NUDCD3Q8IVD9 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
NUDCD3Q8IVD9 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
NUDCD3Q8IVD9 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC17.28■□□□□ 0.36
NUDCD3Q8IVD9 AC091980.2-201ENST00000619056 2775 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
NUDCD3Q8IVD9 KLK14-201ENST00000156499 1060 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
NUDCD3Q8IVD9 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
NUDCD3Q8IVD9 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
NUDCD3Q8IVD9 MIR718-201ENST00000390190 70 ntBASIC17.28■□□□□ 0.36
NUDCD3Q8IVD9 KLK14-202ENST00000391802 1133 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
NUDCD3Q8IVD9 SLC25A1P3-201ENST00000395415 828 ntBASIC17.28■□□□□ 0.36
NUDCD3Q8IVD9 ECEL1P2-202ENST00000465689 757 ntBASIC17.28■□□□□ 0.36
NUDCD3Q8IVD9 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC17.28■□□□□ 0.36
NUDCD3Q8IVD9 AC034232.1-201ENST00000506026 1064 ntBASIC17.28■□□□□ 0.36
NUDCD3Q8IVD9 RPS20-210ENST00000523936 899 ntTSL 2 BASIC17.28■□□□□ 0.36
NUDCD3Q8IVD9 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC17.28■□□□□ 0.36
NUDCD3Q8IVD9 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC17.28■□□□□ 0.36
NUDCD3Q8IVD9 AL355075.4-201ENST00000554988 638 ntBASIC17.28■□□□□ 0.36
NUDCD3Q8IVD9 TEN1-204ENST00000588202 862 ntTSL 3 BASIC17.28■□□□□ 0.36
NUDCD3Q8IVD9 FAM87A-204ENST00000613235 858 ntBASIC17.28■□□□□ 0.36
NUDCD3Q8IVD9 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
NUDCD3Q8IVD9 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
NUDCD3Q8IVD9 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC17.28■□□□□ 0.36
NUDCD3Q8IVD9 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC17.28■□□□□ 0.36
NUDCD3Q8IVD9 PEG3-206ENST00000598410 5304 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
NUDCD3Q8IVD9 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC17.28■□□□□ 0.36
NUDCD3Q8IVD9 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
NUDCD3Q8IVD9 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
NUDCD3Q8IVD9 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
NUDCD3Q8IVD9 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC17.28■□□□□ 0.36
NUDCD3Q8IVD9 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC17.28■□□□□ 0.36
NUDCD3Q8IVD9 AC026412.1-202ENST00000512335 2231 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
NUDCD3Q8IVD9 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
NUDCD3Q8IVD9 NSFL1C-201ENST00000216879 3568 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
NUDCD3Q8IVD9 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 35.9 ms