Protein–RNA interactions for Protein: Q5THJ4

VPS13D, Vacuolar protein sorting-associated protein 13D, humanhuman

Predictions only

Length 4,388 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13DQ5THJ4 PRAP1-201ENST00000433452 971 ntAPPRIS P3 TSL 1 (best) BASIC11.54□□□□□ -0.56
VPS13DQ5THJ4 SPTLC1P1-201ENST00000447199 261 ntBASIC11.54□□□□□ -0.56
VPS13DQ5THJ4 SLC25A39P2-201ENST00000537614 270 ntBASIC11.54□□□□□ -0.56
VPS13DQ5THJ4 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC11.54□□□□□ -0.56
VPS13DQ5THJ4 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
VPS13DQ5THJ4 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
VPS13DQ5THJ4 PHYHD1-202ENST00000353176 1374 ntTSL 5 BASIC11.54□□□□□ -0.56
VPS13DQ5THJ4 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC11.54□□□□□ -0.56
VPS13DQ5THJ4 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
VPS13DQ5THJ4 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC11.54□□□□□ -0.56
VPS13DQ5THJ4 DUPD1-201ENST00000338487 663 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
VPS13DQ5THJ4 ZDHHC20-IT1-201ENST00000417513 440 ntTSL 3 BASIC11.54□□□□□ -0.56
VPS13DQ5THJ4 SHBG-204ENST00000441599 973 ntAPPRIS ALT2 TSL 1 (best) BASIC11.54□□□□□ -0.56
VPS13DQ5THJ4 RN7SL589P-201ENST00000481268 310 ntBASIC11.54□□□□□ -0.56
VPS13DQ5THJ4 SPDYE12P-201ENST00000618416 771 ntBASIC11.54□□□□□ -0.56
VPS13DQ5THJ4 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
VPS13DQ5THJ4 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC11.54□□□□□ -0.56
VPS13DQ5THJ4 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
VPS13DQ5THJ4 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC11.54□□□□□ -0.56
VPS13DQ5THJ4 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC11.54□□□□□ -0.56
VPS13DQ5THJ4 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC11.54□□□□□ -0.56
VPS13DQ5THJ4 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC11.54□□□□□ -0.56
VPS13DQ5THJ4 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC11.54□□□□□ -0.56
VPS13DQ5THJ4 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
VPS13DQ5THJ4 ADIRF-201ENST00000372013 917 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
VPS13DQ5THJ4 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC11.53□□□□□ -0.56
VPS13DQ5THJ4 GOLGA6L11P-201ENST00000417252 1298 ntBASIC11.53□□□□□ -0.56
VPS13DQ5THJ4 CD4-210ENST00000541982 1187 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
VPS13DQ5THJ4 AC007216.4-201ENST00000574364 562 ntTSL 4 BASIC11.53□□□□□ -0.56
VPS13DQ5THJ4 AL390754.1-201ENST00000619088 582 ntBASIC11.53□□□□□ -0.56
VPS13DQ5THJ4 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
VPS13DQ5THJ4 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC11.53□□□□□ -0.56
VPS13DQ5THJ4 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC11.53□□□□□ -0.56
VPS13DQ5THJ4 ERCC1-201ENST00000013807 1278 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
VPS13DQ5THJ4 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
VPS13DQ5THJ4 CYB5A-203ENST00000397914 619 ntTSL 3 BASIC11.53□□□□□ -0.56
VPS13DQ5THJ4 SPDYE7P-202ENST00000420373 878 ntBASIC11.53□□□□□ -0.56
VPS13DQ5THJ4 Z98749.2-201ENST00000428294 700 ntTSL 5 BASIC11.53□□□□□ -0.56
VPS13DQ5THJ4 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
VPS13DQ5THJ4 APBB2-208ENST00000504305 1274 ntTSL 5 BASIC11.53□□□□□ -0.56
VPS13DQ5THJ4 AC114956.2-201ENST00000512498 572 ntTSL 4 BASIC11.53□□□□□ -0.56
VPS13DQ5THJ4 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC11.53□□□□□ -0.56
VPS13DQ5THJ4 SLC8B1-206ENST00000549069 1058 ntTSL 2 BASIC11.53□□□□□ -0.56
VPS13DQ5THJ4 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
VPS13DQ5THJ4 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC11.53□□□□□ -0.56
VPS13DQ5THJ4 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
VPS13DQ5THJ4 GALNT9-208ENST00000541995 1001 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
VPS13DQ5THJ4 AC073389.1-201ENST00000595595 795 ntBASIC11.53□□□□□ -0.56
VPS13DQ5THJ4 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC11.53□□□□□ -0.56
VPS13DQ5THJ4 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC11.53□□□□□ -0.56
VPS13DQ5THJ4 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC11.53□□□□□ -0.56
VPS13DQ5THJ4 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC11.53□□□□□ -0.56
VPS13DQ5THJ4 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC11.53□□□□□ -0.56
VPS13DQ5THJ4 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC11.53□□□□□ -0.56
VPS13DQ5THJ4 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
VPS13DQ5THJ4 TEX30-202ENST00000376021 1038 ntTSL 2 BASIC11.53□□□□□ -0.56
VPS13DQ5THJ4 AL357497.1-201ENST00000436249 666 ntTSL 3 BASIC11.53□□□□□ -0.56
VPS13DQ5THJ4 FXYD1-202ENST00000455515 594 ntAPPRIS P1 TSL 2 BASIC11.53□□□□□ -0.56
VPS13DQ5THJ4 API5-211ENST00000534695 560 ntTSL 5 BASIC11.53□□□□□ -0.56
VPS13DQ5THJ4 MRPS23-202ENST00000578444 580 ntTSL 2 BASIC11.53□□□□□ -0.56
VPS13DQ5THJ4 MIR3909-201ENST00000579518 119 ntBASIC11.53□□□□□ -0.56
VPS13DQ5THJ4 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
VPS13DQ5THJ4 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
VPS13DQ5THJ4 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
VPS13DQ5THJ4 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
VPS13DQ5THJ4 ANKRD20A5P-207ENST00000581935 2089 ntTSL 2 BASIC11.53□□□□□ -0.56
VPS13DQ5THJ4 SARS2-212ENST00000600042 1630 ntTSL 2 BASIC11.52□□□□□ -0.56
VPS13DQ5THJ4 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.56
VPS13DQ5THJ4 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC11.52□□□□□ -0.56
VPS13DQ5THJ4 AC008750.1-201ENST00000532473 492 ntTSL 3 BASIC11.52□□□□□ -0.56
VPS13DQ5THJ4 BANF1P1-201ENST00000553684 263 ntBASIC11.52□□□□□ -0.56
VPS13DQ5THJ4 MZF1-202ENST00000594108 1110 ntTSL 1 (best) BASIC11.52□□□□□ -0.56
VPS13DQ5THJ4 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC11.52□□□□□ -0.56
VPS13DQ5THJ4 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC11.52□□□□□ -0.56
VPS13DQ5THJ4 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC11.52□□□□□ -0.56
VPS13DQ5THJ4 FAM172A-206ENST00000509163 1369 ntTSL 2 BASIC11.52□□□□□ -0.56
VPS13DQ5THJ4 AC100757.3-201ENST00000622361 1406 ntBASIC11.52□□□□□ -0.56
VPS13DQ5THJ4 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC11.52□□□□□ -0.56
VPS13DQ5THJ4 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.56
VPS13DQ5THJ4 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC11.52□□□□□ -0.56
VPS13DQ5THJ4 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC11.52□□□□□ -0.56
VPS13DQ5THJ4 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC11.52□□□□□ -0.56
VPS13DQ5THJ4 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC11.52□□□□□ -0.57
VPS13DQ5THJ4 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC11.52□□□□□ -0.57
VPS13DQ5THJ4 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
VPS13DQ5THJ4 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC11.52□□□□□ -0.57
VPS13DQ5THJ4 SLC25A1P3-201ENST00000395415 828 ntBASIC11.52□□□□□ -0.57
VPS13DQ5THJ4 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC11.52□□□□□ -0.57
VPS13DQ5THJ4 AC005237.2-201ENST00000434368 219 ntBASIC11.52□□□□□ -0.57
VPS13DQ5THJ4 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC11.52□□□□□ -0.57
VPS13DQ5THJ4 AL009183.1-201ENST00000603760 355 ntBASIC11.52□□□□□ -0.57
VPS13DQ5THJ4 MIR6752-201ENST00000618442 71 ntBASIC11.52□□□□□ -0.57
VPS13DQ5THJ4 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
VPS13DQ5THJ4 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
VPS13DQ5THJ4 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC11.52□□□□□ -0.57
VPS13DQ5THJ4 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
VPS13DQ5THJ4 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC11.52□□□□□ -0.57
VPS13DQ5THJ4 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
VPS13DQ5THJ4 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
VPS13DQ5THJ4 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
Retrieved 100 of 98,524 protein–RNA pairs in 26.7 ms