Protein–RNA interactions for Protein: Q08174

PCDH1, Protocadherin-1, humanhuman

Predictions only

Length 1,060 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1Q08174 ZFP91-201ENST00000316059 5220 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
PCDH1Q08174 RHOBTB1-201ENST00000337910 4473 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
PCDH1Q08174 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
PCDH1Q08174 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC16.78■□□□□ 0.28
PCDH1Q08174 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC16.78■□□□□ 0.28
PCDH1Q08174 KCNV2-201ENST00000382082 2186 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
PCDH1Q08174 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC16.78■□□□□ 0.28
PCDH1Q08174 SOCS7-201ENST00000612932 7857 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
PCDH1Q08174 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
PCDH1Q08174 WNK1-206ENST00000535572 9886 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
PCDH1Q08174 TRIL-201ENST00000539664 4935 ntAPPRIS P1 BASIC16.78■□□□□ 0.28
PCDH1Q08174 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
PCDH1Q08174 MAPT-205ENST00000351559 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
PCDH1Q08174 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC16.77■□□□□ 0.28
PCDH1Q08174 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.28
PCDH1Q08174 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.28
PCDH1Q08174 PCCB-201ENST00000251654 1833 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.28
PCDH1Q08174 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
PCDH1Q08174 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
PCDH1Q08174 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC16.77■□□□□ 0.28
PCDH1Q08174 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
PCDH1Q08174 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
PCDH1Q08174 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
PCDH1Q08174 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
PCDH1Q08174 SOD2-201ENST00000337404 991 ntTSL 2 BASIC16.77■□□□□ 0.28
PCDH1Q08174 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC16.77■□□□□ 0.28
PCDH1Q08174 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC16.77■□□□□ 0.28
PCDH1Q08174 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
PCDH1Q08174 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC16.77■□□□□ 0.28
PCDH1Q08174 GZMM-202ENST00000592501 941 ntTSL 3 BASIC16.77■□□□□ 0.28
PCDH1Q08174 AC008567.3-202ENST00000619671 859 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
PCDH1Q08174 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC16.77■□□□□ 0.28
PCDH1Q08174 AC073592.5-201ENST00000624854 528 ntBASIC16.77■□□□□ 0.28
PCDH1Q08174 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
PCDH1Q08174 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC16.77■□□□□ 0.27
PCDH1Q08174 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC16.77■□□□□ 0.27
PCDH1Q08174 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
PCDH1Q08174 SIGLEC16-201ENST00000599858 1437 ntBASIC16.77■□□□□ 0.27
PCDH1Q08174 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC16.77■□□□□ 0.27
PCDH1Q08174 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC16.77■□□□□ 0.27
PCDH1Q08174 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
PCDH1Q08174 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
PCDH1Q08174 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC16.77■□□□□ 0.27
PCDH1Q08174 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
PCDH1Q08174 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
PCDH1Q08174 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
PCDH1Q08174 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC16.77■□□□□ 0.27
PCDH1Q08174 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
PCDH1Q08174 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC16.77■□□□□ 0.27
PCDH1Q08174 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.27
PCDH1Q08174 PDS5A-201ENST00000303538 7176 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
PCDH1Q08174 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC16.76■□□□□ 0.27
PCDH1Q08174 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
PCDH1Q08174 KLK6-202ENST00000376851 1708 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
PCDH1Q08174 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC16.76■□□□□ 0.27
PCDH1Q08174 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC16.76■□□□□ 0.27
PCDH1Q08174 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC16.76■□□□□ 0.27
PCDH1Q08174 DUSP4-201ENST00000240100 5537 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
PCDH1Q08174 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC16.76■□□□□ 0.27
PCDH1Q08174 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
PCDH1Q08174 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC16.76■□□□□ 0.27
PCDH1Q08174 ZNF804A-201ENST00000302277 4690 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
PCDH1Q08174 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC16.76■□□□□ 0.27
PCDH1Q08174 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
PCDH1Q08174 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
PCDH1Q08174 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC16.76■□□□□ 0.27
PCDH1Q08174 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
PCDH1Q08174 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC16.76■□□□□ 0.27
PCDH1Q08174 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC16.76■□□□□ 0.27
PCDH1Q08174 KRT16P4-201ENST00000453883 522 ntBASIC16.76■□□□□ 0.27
PCDH1Q08174 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC16.76■□□□□ 0.27
PCDH1Q08174 AC096582.2-201ENST00000510860 516 ntBASIC16.76■□□□□ 0.27
PCDH1Q08174 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC16.76■□□□□ 0.27
PCDH1Q08174 FICD-205ENST00000552758 603 ntTSL 2 BASIC16.76■□□□□ 0.27
PCDH1Q08174 MIR5100-201ENST00000579544 119 ntBASIC16.76■□□□□ 0.27
PCDH1Q08174 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC16.76■□□□□ 0.27
PCDH1Q08174 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
PCDH1Q08174 FBXO7-201ENST00000266087 2195 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
PCDH1Q08174 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
PCDH1Q08174 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC16.76■□□□□ 0.27
PCDH1Q08174 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
PCDH1Q08174 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC16.76■□□□□ 0.27
PCDH1Q08174 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
PCDH1Q08174 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
PCDH1Q08174 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC16.76■□□□□ 0.27
PCDH1Q08174 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
PCDH1Q08174 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
PCDH1Q08174 CEP120-201ENST00000306467 4900 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
PCDH1Q08174 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
PCDH1Q08174 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
PCDH1Q08174 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC16.75■□□□□ 0.27
PCDH1Q08174 AL135999.2-201ENST00000622438 1686 ntBASIC16.75■□□□□ 0.27
PCDH1Q08174 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
PCDH1Q08174 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
PCDH1Q08174 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC16.75■□□□□ 0.27
PCDH1Q08174 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC16.75■□□□□ 0.27
PCDH1Q08174 C4orf50-202ENST00000531445 6860 ntAPPRIS P5 TSL 5 BASIC16.75■□□□□ 0.27
PCDH1Q08174 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
PCDH1Q08174 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
PCDH1Q08174 C2orf81-202ENST00000612891 1902 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 28.7 ms