Protein–RNA interactions for Protein: Q00526

CDK3, Cyclin-dependent kinase 3, humanhuman

Predictions only

Length 305 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDK3Q00526 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
CDK3Q00526 AL133373.2-201ENST00000623187 2828 ntBASIC17.07■□□□□ 0.32
CDK3Q00526 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
CDK3Q00526 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CDK3Q00526 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC17.07■□□□□ 0.32
CDK3Q00526 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC17.07■□□□□ 0.32
CDK3Q00526 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC17.07■□□□□ 0.32
CDK3Q00526 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
CDK3Q00526 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
CDK3Q00526 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC17.07■□□□□ 0.32
CDK3Q00526 SOWAHC-201ENST00000356454 4657 ntAPPRIS P1 BASIC17.06■□□□□ 0.32
CDK3Q00526 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CDK3Q00526 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
CDK3Q00526 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC17.06■□□□□ 0.32
CDK3Q00526 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC17.06■□□□□ 0.32
CDK3Q00526 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
CDK3Q00526 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
CDK3Q00526 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
CDK3Q00526 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CDK3Q00526 AC067852.2-201ENST00000590513 2313 ntBASIC17.06■□□□□ 0.32
CDK3Q00526 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC17.06■□□□□ 0.32
CDK3Q00526 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CDK3Q00526 NABP1-203ENST00000409510 843 ntTSL 5 BASIC17.06■□□□□ 0.32
CDK3Q00526 PDE6D-202ENST00000409772 672 ntTSL 3 BASIC17.06■□□□□ 0.32
CDK3Q00526 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC17.06■□□□□ 0.32
CDK3Q00526 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
CDK3Q00526 IQGAP2-201ENST00000274364 5844 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CDK3Q00526 AZIN1-201ENST00000337198 4721 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CDK3Q00526 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CDK3Q00526 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
CDK3Q00526 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC17.06■□□□□ 0.32
CDK3Q00526 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
CDK3Q00526 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC17.06■□□□□ 0.32
CDK3Q00526 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC17.06■□□□□ 0.32
CDK3Q00526 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CDK3Q00526 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
CDK3Q00526 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC17.06■□□□□ 0.32
CDK3Q00526 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CDK3Q00526 ITGA6-201ENST00000264107 5618 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CDK3Q00526 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
CDK3Q00526 EVPL-202ENST00000586740 6223 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
CDK3Q00526 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
CDK3Q00526 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC17.05■□□□□ 0.32
CDK3Q00526 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CDK3Q00526 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
CDK3Q00526 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CDK3Q00526 PIGU-202ENST00000374820 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
CDK3Q00526 METTL26-205ENST00000397666 726 ntTSL 2 BASIC17.05■□□□□ 0.32
CDK3Q00526 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC17.05■□□□□ 0.32
CDK3Q00526 CRCP-205ENST00000431089 942 ntTSL 2 BASIC17.05■□□□□ 0.32
CDK3Q00526 AC007967.2-201ENST00000432613 625 ntBASIC17.05■□□□□ 0.32
CDK3Q00526 HS6ST1P1-201ENST00000481504 1234 ntBASIC17.05■□□□□ 0.32
CDK3Q00526 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC17.05■□□□□ 0.32
CDK3Q00526 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC17.05■□□□□ 0.32
CDK3Q00526 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC17.05■□□□□ 0.32
CDK3Q00526 MIR4751-201ENST00000578027 74 ntBASIC17.05■□□□□ 0.32
CDK3Q00526 TCAP-202ENST00000578283 583 ntTSL 5 BASIC17.05■□□□□ 0.32
CDK3Q00526 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC17.05■□□□□ 0.32
CDK3Q00526 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC17.05■□□□□ 0.32
CDK3Q00526 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
CDK3Q00526 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
CDK3Q00526 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC17.05■□□□□ 0.32
CDK3Q00526 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
CDK3Q00526 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
CDK3Q00526 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
CDK3Q00526 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC17.05■□□□□ 0.32
CDK3Q00526 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
CDK3Q00526 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
CDK3Q00526 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
CDK3Q00526 ARID1B-203ENST00000350026 7962 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
CDK3Q00526 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CDK3Q00526 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CDK3Q00526 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
CDK3Q00526 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
CDK3Q00526 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC17.04■□□□□ 0.32
CDK3Q00526 PMS2P7-201ENST00000506558 1336 ntBASIC17.04■□□□□ 0.32
CDK3Q00526 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC17.04■□□□□ 0.32
CDK3Q00526 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
CDK3Q00526 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
CDK3Q00526 AL138688.1-201ENST00000624851 1594 ntBASIC17.04■□□□□ 0.32
CDK3Q00526 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CDK3Q00526 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CDK3Q00526 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CDK3Q00526 KRT18P3-201ENST00000451602 1288 ntBASIC17.04■□□□□ 0.32
CDK3Q00526 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC17.04■□□□□ 0.32
CDK3Q00526 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC17.04■□□□□ 0.32
CDK3Q00526 CIPC-205ENST00000555437 566 ntTSL 3 BASIC17.04■□□□□ 0.32
CDK3Q00526 RIN3-211ENST00000557762 517 ntTSL 3 BASIC17.04■□□□□ 0.32
CDK3Q00526 AC004790.2-201ENST00000623588 572 ntBASIC17.04■□□□□ 0.32
CDK3Q00526 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC17.04■□□□□ 0.32
CDK3Q00526 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
CDK3Q00526 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC17.04■□□□□ 0.32
CDK3Q00526 EIF5-201ENST00000216554 5945 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CDK3Q00526 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC17.03■□□□□ 0.32
CDK3Q00526 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
CDK3Q00526 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC17.03■□□□□ 0.32
CDK3Q00526 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
CDK3Q00526 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
CDK3Q00526 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CDK3Q00526 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC17.03■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 48.9 ms