Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
CLRN1P58418 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
CLRN1P58418 SHISA6-204ENST00000441885 7575 ntAPPRIS P3 TSL 5 BASIC15.57■□□□□ 0.08
CLRN1P58418 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
CLRN1P58418 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
CLRN1P58418 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC15.57■□□□□ 0.08
CLRN1P58418 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC15.57■□□□□ 0.08
CLRN1P58418 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC15.57■□□□□ 0.08
CLRN1P58418 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC15.57■□□□□ 0.08
CLRN1P58418 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC15.57■□□□□ 0.08
CLRN1P58418 TP73-AS1-210ENST00000637775 1455 ntBASIC15.57■□□□□ 0.08
CLRN1P58418 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC15.57■□□□□ 0.08
CLRN1P58418 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC15.57■□□□□ 0.08
CLRN1P58418 ASTN2-205ENST00000361209 4622 ntAPPRIS P2 TSL 1 (best) BASIC15.57■□□□□ 0.08
CLRN1P58418 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
CLRN1P58418 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
CLRN1P58418 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
CLRN1P58418 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
CLRN1P58418 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
CLRN1P58418 SLC9A2-201ENST00000233969 5410 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
CLRN1P58418 SRF-201ENST00000265354 4202 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
CLRN1P58418 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC15.56■□□□□ 0.08
CLRN1P58418 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC15.56■□□□□ 0.08
CLRN1P58418 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
CLRN1P58418 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC15.56■□□□□ 0.08
CLRN1P58418 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC15.56■□□□□ 0.08
CLRN1P58418 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC15.56■□□□□ 0.08
CLRN1P58418 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC15.56■□□□□ 0.08
CLRN1P58418 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC15.56■□□□□ 0.08
CLRN1P58418 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
CLRN1P58418 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
CLRN1P58418 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC15.56■□□□□ 0.08
CLRN1P58418 CD9-202ENST00000382515 1229 ntTSL 5 BASIC15.56■□□□□ 0.08
CLRN1P58418 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC15.56■□□□□ 0.08
CLRN1P58418 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC15.56■□□□□ 0.08
CLRN1P58418 AC132938.3-201ENST00000579095 357 ntTSL 2 BASIC15.56■□□□□ 0.08
CLRN1P58418 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC15.56■□□□□ 0.08
CLRN1P58418 TK1-204ENST00000590430 683 ntTSL 3 BASIC15.56■□□□□ 0.08
CLRN1P58418 AC092329.2-201ENST00000598402 547 ntBASIC15.56■□□□□ 0.08
CLRN1P58418 AC011467.2-201ENST00000598425 242 ntBASIC15.56■□□□□ 0.08
CLRN1P58418 AC092119.3-201ENST00000612618 583 ntBASIC15.56■□□□□ 0.08
CLRN1P58418 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC15.56■□□□□ 0.08
CLRN1P58418 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC15.56■□□□□ 0.08
CLRN1P58418 HAUS8-201ENST00000253669 1568 ntAPPRIS P3 TSL 1 (best) BASIC15.56■□□□□ 0.08
CLRN1P58418 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC15.56■□□□□ 0.08
CLRN1P58418 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
CLRN1P58418 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC15.56■□□□□ 0.08
CLRN1P58418 DENND3-201ENST00000262585 5438 ntAPPRIS P2 TSL 5 BASIC15.56■□□□□ 0.08
CLRN1P58418 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
CLRN1P58418 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC15.56■□□□□ 0.08
CLRN1P58418 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC15.56■□□□□ 0.08
CLRN1P58418 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC15.56■□□□□ 0.08
CLRN1P58418 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC15.56■□□□□ 0.08
CLRN1P58418 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC15.56■□□□□ 0.08
CLRN1P58418 GAS7-203ENST00000432992 4970 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
CLRN1P58418 COL18A1-203ENST00000359759 6586 ntAPPRIS ALT2 TSL 5 BASIC15.55■□□□□ 0.08
CLRN1P58418 TSC2-207ENST00000439673 5287 ntAPPRIS ALT2 TSL 2 BASIC15.55■□□□□ 0.08
CLRN1P58418 SLC9A6-203ENST00000370701 4755 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
CLRN1P58418 NEO1-206ENST00000558964 4441 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
CLRN1P58418 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
CLRN1P58418 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC15.55■□□□□ 0.08
CLRN1P58418 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
CLRN1P58418 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
CLRN1P58418 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
CLRN1P58418 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC15.55■□□□□ 0.08
CLRN1P58418 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC15.55■□□□□ 0.08
CLRN1P58418 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC15.55■□□□□ 0.08
CLRN1P58418 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
CLRN1P58418 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC15.55■□□□□ 0.08
CLRN1P58418 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
CLRN1P58418 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
CLRN1P58418 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC15.55■□□□□ 0.08
CLRN1P58418 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC15.55■□□□□ 0.08
CLRN1P58418 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC15.55■□□□□ 0.08
CLRN1P58418 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
CLRN1P58418 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC15.55■□□□□ 0.08
CLRN1P58418 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC15.55■□□□□ 0.08
CLRN1P58418 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
CLRN1P58418 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC15.55■□□□□ 0.08
CLRN1P58418 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC15.55■□□□□ 0.08
CLRN1P58418 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
CLRN1P58418 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
CLRN1P58418 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
CLRN1P58418 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
CLRN1P58418 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC15.55■□□□□ 0.08
CLRN1P58418 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
CLRN1P58418 SHANK3-201ENST00000262795 7091 ntAPPRIS P5 TSL 5 BASIC15.55■□□□□ 0.08
CLRN1P58418 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC15.55■□□□□ 0.08
CLRN1P58418 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
CLRN1P58418 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC15.55■□□□□ 0.08
CLRN1P58418 MON2-213ENST00000552738 5543 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
CLRN1P58418 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC15.54■□□□□ 0.08
CLRN1P58418 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC15.54■□□□□ 0.08
CLRN1P58418 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
CLRN1P58418 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
CLRN1P58418 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC15.54■□□□□ 0.08
CLRN1P58418 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC15.54■□□□□ 0.08
CLRN1P58418 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC15.54■□□□□ 0.08
CLRN1P58418 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC15.54■□□□□ 0.08
CLRN1P58418 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 35.2 ms