Protein–RNA interactions for Protein: P56589

PEX3, Peroxisomal biogenesis factor 3, humanhuman

Predictions only

Length 373 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PEX3P56589 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC19.14■□□□□ 0.65
PEX3P56589 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
PEX3P56589 MIR7706-201ENST00000613747 67 ntBASIC19.14■□□□□ 0.65
PEX3P56589 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
PEX3P56589 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC19.14■□□□□ 0.65
PEX3P56589 NCF1C-201ENST00000438382 1427 ntBASIC19.14■□□□□ 0.65
PEX3P56589 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
PEX3P56589 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC19.14■□□□□ 0.65
PEX3P56589 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC19.14■□□□□ 0.65
PEX3P56589 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC19.14■□□□□ 0.65
PEX3P56589 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
PEX3P56589 OGG1-206ENST00000349503 1950 ntTSL 5 BASIC19.13■□□□□ 0.65
PEX3P56589 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC19.13■□□□□ 0.65
PEX3P56589 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC19.13■□□□□ 0.65
PEX3P56589 GCGR-201ENST00000400723 2051 ntAPPRIS P2 TSL 1 (best) BASIC19.13■□□□□ 0.65
PEX3P56589 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
PEX3P56589 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
PEX3P56589 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
PEX3P56589 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC19.13■□□□□ 0.65
PEX3P56589 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
PEX3P56589 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
PEX3P56589 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC19.13■□□□□ 0.65
PEX3P56589 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
PEX3P56589 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
PEX3P56589 RPS2P28-201ENST00000314255 741 ntBASIC19.13■□□□□ 0.65
PEX3P56589 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC19.13■□□□□ 0.65
PEX3P56589 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
PEX3P56589 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC19.13■□□□□ 0.65
PEX3P56589 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
PEX3P56589 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
PEX3P56589 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC19.13■□□□□ 0.65
PEX3P56589 PENK-208ENST00000523051 772 ntTSL 5 BASIC19.13■□□□□ 0.65
PEX3P56589 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC19.13■□□□□ 0.65
PEX3P56589 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC19.13■□□□□ 0.65
PEX3P56589 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC19.13■□□□□ 0.65
PEX3P56589 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
PEX3P56589 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
PEX3P56589 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC19.13■□□□□ 0.65
PEX3P56589 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC19.13■□□□□ 0.65
PEX3P56589 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
PEX3P56589 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC19.13■□□□□ 0.65
PEX3P56589 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
PEX3P56589 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC19.13■□□□□ 0.65
PEX3P56589 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
PEX3P56589 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
PEX3P56589 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
PEX3P56589 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
PEX3P56589 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
PEX3P56589 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC19.12■□□□□ 0.65
PEX3P56589 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC19.12■□□□□ 0.65
PEX3P56589 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC19.12■□□□□ 0.65
PEX3P56589 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC19.12■□□□□ 0.65
PEX3P56589 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC19.12■□□□□ 0.65
PEX3P56589 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
PEX3P56589 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
PEX3P56589 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
PEX3P56589 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
PEX3P56589 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC19.12■□□□□ 0.65
PEX3P56589 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
PEX3P56589 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC19.12■□□□□ 0.65
PEX3P56589 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC19.12■□□□□ 0.65
PEX3P56589 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC19.12■□□□□ 0.65
PEX3P56589 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC19.12■□□□□ 0.65
PEX3P56589 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC19.12■□□□□ 0.65
PEX3P56589 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC19.12■□□□□ 0.65
PEX3P56589 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC19.12■□□□□ 0.65
PEX3P56589 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC19.12■□□□□ 0.65
PEX3P56589 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC19.12■□□□□ 0.65
PEX3P56589 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC19.12■□□□□ 0.65
PEX3P56589 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
PEX3P56589 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC19.12■□□□□ 0.65
PEX3P56589 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
PEX3P56589 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC19.12■□□□□ 0.65
PEX3P56589 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
PEX3P56589 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC19.12■□□□□ 0.65
PEX3P56589 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC19.12■□□□□ 0.65
PEX3P56589 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC19.12■□□□□ 0.65
PEX3P56589 AC141586.5-201ENST00000624546 2050 ntBASIC19.12■□□□□ 0.65
PEX3P56589 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
PEX3P56589 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
PEX3P56589 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC19.11■□□□□ 0.65
PEX3P56589 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
PEX3P56589 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC19.11■□□□□ 0.65
PEX3P56589 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
PEX3P56589 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
PEX3P56589 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
PEX3P56589 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
PEX3P56589 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
PEX3P56589 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
PEX3P56589 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
PEX3P56589 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC19.11■□□□□ 0.65
PEX3P56589 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC19.11■□□□□ 0.65
PEX3P56589 ACTG1P4-201ENST00000425123 1122 ntBASIC19.11■□□□□ 0.65
PEX3P56589 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC19.11■□□□□ 0.65
PEX3P56589 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC19.11■□□□□ 0.65
PEX3P56589 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC19.11■□□□□ 0.65
PEX3P56589 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
PEX3P56589 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC19.11■□□□□ 0.65
PEX3P56589 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC19.11■□□□□ 0.65
PEX3P56589 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC19.11■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 51.1 ms