Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
PKNOX1P55347 CNPPD1-201ENST00000360507 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PKNOX1P55347 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC17.09■□□□□ 0.33
PKNOX1P55347 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC17.09■□□□□ 0.33
PKNOX1P55347 DUSP8-201ENST00000331588 4455 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PKNOX1P55347 ADGRB2-206ENST00000398556 4879 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
PKNOX1P55347 LCORL-203ENST00000382226 5009 ntAPPRIS P2 TSL 5 BASIC17.09■□□□□ 0.33
PKNOX1P55347 MTCL1-205ENST00000517570 6009 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
PKNOX1P55347 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC17.08■□□□□ 0.33
PKNOX1P55347 SSH1-201ENST00000326470 2432 ntAPPRIS ALT2 TSL 2 BASIC17.08■□□□□ 0.33
PKNOX1P55347 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
PKNOX1P55347 C10orf10-201ENST00000298295 2120 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
PKNOX1P55347 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC17.08■□□□□ 0.33
PKNOX1P55347 GCGR-201ENST00000400723 2051 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.33
PKNOX1P55347 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC17.08■□□□□ 0.33
PKNOX1P55347 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC17.08■□□□□ 0.33
PKNOX1P55347 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
PKNOX1P55347 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC17.08■□□□□ 0.32
PKNOX1P55347 CNTNAP3-201ENST00000297668 5064 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
PKNOX1P55347 ADM-208ENST00000534464 1640 ntTSL 2 BASIC17.08■□□□□ 0.32
PKNOX1P55347 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.32
PKNOX1P55347 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
PKNOX1P55347 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC17.08■□□□□ 0.32
PKNOX1P55347 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
PKNOX1P55347 BAALC-202ENST00000306391 243 ntTSL 5 BASIC17.08■□□□□ 0.32
PKNOX1P55347 BAALC-204ENST00000330955 222 ntTSL 5 BASIC17.08■□□□□ 0.32
PKNOX1P55347 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC17.08■□□□□ 0.32
PKNOX1P55347 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
PKNOX1P55347 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC17.08■□□□□ 0.32
PKNOX1P55347 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC17.08■□□□□ 0.32
PKNOX1P55347 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
PKNOX1P55347 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC17.08■□□□□ 0.32
PKNOX1P55347 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC17.08■□□□□ 0.32
PKNOX1P55347 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
PKNOX1P55347 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
PKNOX1P55347 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC17.08■□□□□ 0.32
PKNOX1P55347 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC17.08■□□□□ 0.32
PKNOX1P55347 HYMAI.1-201ENST00000620949 238 ntBASIC17.08■□□□□ 0.32
PKNOX1P55347 SATB1-201ENST00000338745 7810 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
PKNOX1P55347 PLPPR4-202ENST00000370185 5369 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
PKNOX1P55347 KDM6A-202ENST00000382899 5789 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
PKNOX1P55347 GLOD4-203ENST00000536578 2497 ntTSL 5 BASIC17.08■□□□□ 0.32
PKNOX1P55347 HCN1-201ENST00000303230 9885 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
PKNOX1P55347 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC17.08■□□□□ 0.32
PKNOX1P55347 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
PKNOX1P55347 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
PKNOX1P55347 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC17.08■□□□□ 0.32
PKNOX1P55347 PLCD3-212ENST00000619929 6107 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
PKNOX1P55347 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
PKNOX1P55347 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.32
PKNOX1P55347 TBC1D10B-201ENST00000409939 3350 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
PKNOX1P55347 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
PKNOX1P55347 SNRK-204ENST00000454177 2961 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
PKNOX1P55347 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC17.07■□□□□ 0.32
PKNOX1P55347 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC17.07■□□□□ 0.32
PKNOX1P55347 PC-208ENST00000529047 1607 ntTSL 3 BASIC17.07■□□□□ 0.32
PKNOX1P55347 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
PKNOX1P55347 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC17.07■□□□□ 0.32
PKNOX1P55347 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
PKNOX1P55347 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
PKNOX1P55347 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC17.07■□□□□ 0.32
PKNOX1P55347 MEX3C-204ENST00000616921 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
PKNOX1P55347 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
PKNOX1P55347 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC17.07■□□□□ 0.32
PKNOX1P55347 PIAS4-201ENST00000262971 3159 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
PKNOX1P55347 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
PKNOX1P55347 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
PKNOX1P55347 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
PKNOX1P55347 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
PKNOX1P55347 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
PKNOX1P55347 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
PKNOX1P55347 COX5BP2-201ENST00000392354 334 ntBASIC17.07■□□□□ 0.32
PKNOX1P55347 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC17.07■□□□□ 0.32
PKNOX1P55347 AK4P3-201ENST00000418260 669 ntBASIC17.07■□□□□ 0.32
PKNOX1P55347 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC17.07■□□□□ 0.32
PKNOX1P55347 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
PKNOX1P55347 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC17.07■□□□□ 0.32
PKNOX1P55347 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC17.07■□□□□ 0.32
PKNOX1P55347 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC17.07■□□□□ 0.32
PKNOX1P55347 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
PKNOX1P55347 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
PKNOX1P55347 VENTXP5-201ENST00000523979 775 ntBASIC17.07■□□□□ 0.32
PKNOX1P55347 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC17.07■□□□□ 0.32
PKNOX1P55347 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC17.07■□□□□ 0.32
PKNOX1P55347 TMED1-207ENST00000591695 809 ntTSL 5 BASIC17.07■□□□□ 0.32
PKNOX1P55347 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
PKNOX1P55347 ATP2B1-AS1-201ENST00000605386 3632 ntBASIC17.07■□□□□ 0.32
PKNOX1P55347 KRT23-201ENST00000209718 1987 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
PKNOX1P55347 OGG1-206ENST00000349503 1950 ntTSL 5 BASIC17.07■□□□□ 0.32
PKNOX1P55347 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC17.07■□□□□ 0.32
PKNOX1P55347 AL512625.1-201ENST00000305709 2541 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
PKNOX1P55347 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
PKNOX1P55347 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC17.07■□□□□ 0.32
PKNOX1P55347 AC116353.5-201ENST00000638148 1699 ntBASIC17.07■□□□□ 0.32
PKNOX1P55347 STAT5A-201ENST00000345506 4301 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
PKNOX1P55347 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
PKNOX1P55347 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC17.07■□□□□ 0.32
PKNOX1P55347 HAGH-202ENST00000397356 2984 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
PKNOX1P55347 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
PKNOX1P55347 TMEM229B-201ENST00000357461 4068 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 27.9 ms