Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC20.02■□□□□ 0.8
CTCFP49711 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
CTCFP49711 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CTCFP49711 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC20.02■□□□□ 0.8
CTCFP49711 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CTCFP49711 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
CTCFP49711 CLNS1A-210ENST00000528364 953 ntAPPRIS P1 TSL 3 BASIC20.02■□□□□ 0.8
CTCFP49711 RARRES2P8-201ENST00000566335 367 ntBASIC20.02■□□□□ 0.8
CTCFP49711 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CTCFP49711 ACTL9-202ENST00000612068 1252 ntBASIC20.02■□□□□ 0.8
CTCFP49711 EIF6-209ENST00000621148 1054 ntAPPRIS P1 TSL 3 BASIC20.02■□□□□ 0.8
CTCFP49711 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC20.02■□□□□ 0.8
CTCFP49711 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CTCFP49711 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CTCFP49711 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CTCFP49711 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CTCFP49711 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CTCFP49711 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC20.02■□□□□ 0.79
CTCFP49711 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC20.02■□□□□ 0.79
CTCFP49711 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC20.02■□□□□ 0.79
CTCFP49711 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
CTCFP49711 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC20.02■□□□□ 0.79
CTCFP49711 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
CTCFP49711 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
CTCFP49711 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC20.02■□□□□ 0.79
CTCFP49711 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CTCFP49711 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC20.01■□□□□ 0.79
CTCFP49711 AC093503.3-201ENST00000624917 2352 ntBASIC20.01■□□□□ 0.79
CTCFP49711 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC20.01■□□□□ 0.79
CTCFP49711 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC20.01■□□□□ 0.79
CTCFP49711 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CTCFP49711 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC20.01■□□□□ 0.79
CTCFP49711 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC20.01■□□□□ 0.79
CTCFP49711 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CTCFP49711 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC20.01■□□□□ 0.79
CTCFP49711 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
CTCFP49711 COX5BP2-201ENST00000392354 334 ntBASIC20.01■□□□□ 0.79
CTCFP49711 AC008443.3-201ENST00000412295 549 ntTSL 4 BASIC20.01■□□□□ 0.79
CTCFP49711 RCAN1-212ENST00000492600 935 ntTSL 2 BASIC20.01■□□□□ 0.79
CTCFP49711 AC027369.6-201ENST00000525520 931 ntBASIC20.01■□□□□ 0.79
CTCFP49711 AP002008.1-201ENST00000530283 1155 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
CTCFP49711 AC084125.2-203ENST00000532766 821 ntTSL 3 BASIC20.01■□□□□ 0.79
CTCFP49711 TMEM63A-209ENST00000537914 1018 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
CTCFP49711 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
CTCFP49711 POLE2-203ENST00000553805 496 ntTSL 2 BASIC20.01■□□□□ 0.79
CTCFP49711 TMEM205-208ENST00000587948 688 ntAPPRIS P1 TSL 5 BASIC20.01■□□□□ 0.79
CTCFP49711 TMEM205-211ENST00000589555 788 ntAPPRIS P1 TSL 2 BASIC20.01■□□□□ 0.79
CTCFP49711 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
CTCFP49711 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC20.01■□□□□ 0.79
CTCFP49711 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
CTCFP49711 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC20.01■□□□□ 0.79
CTCFP49711 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC20.01■□□□□ 0.79
CTCFP49711 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC20.01■□□□□ 0.79
CTCFP49711 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC20.01■□□□□ 0.79
CTCFP49711 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC20■□□□□ 0.79
CTCFP49711 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
CTCFP49711 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
CTCFP49711 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
CTCFP49711 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC20■□□□□ 0.79
CTCFP49711 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC20■□□□□ 0.79
CTCFP49711 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC20■□□□□ 0.79
CTCFP49711 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC20■□□□□ 0.79
CTCFP49711 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC20■□□□□ 0.79
CTCFP49711 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC20■□□□□ 0.79
CTCFP49711 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
CTCFP49711 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
CTCFP49711 PKIG-202ENST00000372886 1180 ntAPPRIS P1 TSL 2 BASIC20■□□□□ 0.79
CTCFP49711 PRAF2-201ENST00000376386 801 ntTSL 2 BASIC20■□□□□ 0.79
CTCFP49711 TSSK5P-201ENST00000423978 907 ntBASIC20■□□□□ 0.79
CTCFP49711 AL353779.1-201ENST00000434793 351 ntBASIC20■□□□□ 0.79
CTCFP49711 RN7SL752P-201ENST00000463779 287 ntBASIC20■□□□□ 0.79
CTCFP49711 AC019129.2-201ENST00000609837 1235 ntBASIC20■□□□□ 0.79
CTCFP49711 PFAS-212ENST00000625942 396 ntTSL 5 BASIC20■□□□□ 0.79
CTCFP49711 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC20■□□□□ 0.79
CTCFP49711 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC20■□□□□ 0.79
CTCFP49711 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC20■□□□□ 0.79
CTCFP49711 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC20■□□□□ 0.79
CTCFP49711 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
CTCFP49711 CYB561D2-202ENST00000418577 1533 ntAPPRIS P1 TSL 2 BASIC20■□□□□ 0.79
CTCFP49711 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC20■□□□□ 0.79
CTCFP49711 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC20■□□□□ 0.79
CTCFP49711 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC20■□□□□ 0.79
CTCFP49711 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
CTCFP49711 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC20■□□□□ 0.79
CTCFP49711 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC20■□□□□ 0.79
CTCFP49711 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
CTCFP49711 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
CTCFP49711 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
CTCFP49711 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC19.99■□□□□ 0.79
CTCFP49711 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
CTCFP49711 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
CTCFP49711 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
CTCFP49711 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
CTCFP49711 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
CTCFP49711 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC19.99■□□□□ 0.79
CTCFP49711 KRT8P44-201ENST00000441609 1350 ntBASIC19.99■□□□□ 0.79
CTCFP49711 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
CTCFP49711 SIRPAP1-201ENST00000448467 1770 ntBASIC19.99■□□□□ 0.79
CTCFP49711 SS18L2-201ENST00000011691 781 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
CTCFP49711 AP006294.1-201ENST00000415407 339 ntBASIC19.99■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 29.5 ms