Protein–RNA interactions for Protein: P48742

LHX1, LIM/homeobox protein Lhx1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX1P48742 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC18.38■□□□□ 0.53
LHX1P48742 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
LHX1P48742 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC18.38■□□□□ 0.53
LHX1P48742 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC18.38■□□□□ 0.53
LHX1P48742 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC18.38■□□□□ 0.53
LHX1P48742 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
LHX1P48742 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
LHX1P48742 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
LHX1P48742 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
LHX1P48742 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
LHX1P48742 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC18.37■□□□□ 0.53
LHX1P48742 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
LHX1P48742 FGFR1-206ENST00000397091 5702 ntAPPRIS ALT1 TSL 1 (best) BASIC18.37■□□□□ 0.53
LHX1P48742 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
LHX1P48742 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
LHX1P48742 PIGU-202ENST00000374820 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
LHX1P48742 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
LHX1P48742 AL807752.7-201ENST00000471521 989 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
LHX1P48742 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC18.37■□□□□ 0.53
LHX1P48742 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC18.37■□□□□ 0.53
LHX1P48742 TCAP-202ENST00000578283 583 ntTSL 5 BASIC18.37■□□□□ 0.53
LHX1P48742 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC18.37■□□□□ 0.53
LHX1P48742 FAM197Y3-203ENST00000618346 717 ntBASIC18.37■□□□□ 0.53
LHX1P48742 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC18.37■□□□□ 0.53
LHX1P48742 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
LHX1P48742 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
LHX1P48742 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC18.37■□□□□ 0.53
LHX1P48742 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
LHX1P48742 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
LHX1P48742 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
LHX1P48742 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
LHX1P48742 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
LHX1P48742 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
LHX1P48742 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC18.36■□□□□ 0.53
LHX1P48742 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
LHX1P48742 AC108073.2-201ENST00000464002 357 ntBASIC18.36■□□□□ 0.53
LHX1P48742 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
LHX1P48742 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
LHX1P48742 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC18.36■□□□□ 0.53
LHX1P48742 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC18.36■□□□□ 0.53
LHX1P48742 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
LHX1P48742 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
LHX1P48742 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC18.36■□□□□ 0.53
LHX1P48742 TERC-201ENST00000602385 541 ntBASIC18.36■□□□□ 0.53
LHX1P48742 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC18.36■□□□□ 0.53
LHX1P48742 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC18.36■□□□□ 0.53
LHX1P48742 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
LHX1P48742 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
LHX1P48742 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
LHX1P48742 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
LHX1P48742 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
LHX1P48742 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
LHX1P48742 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
LHX1P48742 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
LHX1P48742 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC18.35■□□□□ 0.53
LHX1P48742 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC18.35■□□□□ 0.53
LHX1P48742 PRSS29P-201ENST00000440800 595 ntBASIC18.35■□□□□ 0.53
LHX1P48742 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
LHX1P48742 TRMT112-202ENST00000535126 704 ntTSL 2 BASIC18.35■□□□□ 0.53
LHX1P48742 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC18.35■□□□□ 0.53
LHX1P48742 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
LHX1P48742 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
LHX1P48742 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
LHX1P48742 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
LHX1P48742 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
LHX1P48742 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
LHX1P48742 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC18.35■□□□□ 0.53
LHX1P48742 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
LHX1P48742 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC18.35■□□□□ 0.53
LHX1P48742 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC18.35■□□□□ 0.53
LHX1P48742 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
LHX1P48742 PI4KAP1-204ENST00000612579 1703 ntBASIC18.35■□□□□ 0.53
LHX1P48742 TPR-209ENST00000613151 2478 ntTSL 5 BASIC18.34■□□□□ 0.53
LHX1P48742 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
LHX1P48742 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
LHX1P48742 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC18.34■□□□□ 0.53
LHX1P48742 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
LHX1P48742 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC18.34■□□□□ 0.53
LHX1P48742 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC18.34■□□□□ 0.53
LHX1P48742 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC18.34■□□□□ 0.53
LHX1P48742 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC18.34■□□□□ 0.53
LHX1P48742 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
LHX1P48742 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC18.34■□□□□ 0.53
LHX1P48742 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
LHX1P48742 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
LHX1P48742 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
LHX1P48742 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
LHX1P48742 MED15P5-201ENST00000423150 992 ntBASIC18.34■□□□□ 0.53
LHX1P48742 CRCP-205ENST00000431089 942 ntTSL 2 BASIC18.34■□□□□ 0.53
LHX1P48742 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC18.34■□□□□ 0.53
LHX1P48742 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC18.34■□□□□ 0.53
LHX1P48742 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
LHX1P48742 ANAPC11-210ENST00000574924 722 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
LHX1P48742 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC18.34■□□□□ 0.53
LHX1P48742 AC140113.2-201ENST00000604370 208 ntBASIC18.34■□□□□ 0.53
LHX1P48742 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC18.34■□□□□ 0.53
LHX1P48742 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
LHX1P48742 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
LHX1P48742 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC18.34■□□□□ 0.53
LHX1P48742 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC18.34■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 60.8 ms