Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC17.19■□□□□ 0.34
CXCL12P48061 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CXCL12P48061 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
CXCL12P48061 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC17.19■□□□□ 0.34
CXCL12P48061 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC17.19■□□□□ 0.34
CXCL12P48061 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC17.18■□□□□ 0.34
CXCL12P48061 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
CXCL12P48061 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC17.18■□□□□ 0.34
CXCL12P48061 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CXCL12P48061 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC17.18■□□□□ 0.34
CXCL12P48061 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CXCL12P48061 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC17.18■□□□□ 0.34
CXCL12P48061 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC17.18■□□□□ 0.34
CXCL12P48061 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CXCL12P48061 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CXCL12P48061 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
CXCL12P48061 CSNK1G2-AS1-201ENST00000314315 1252 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
CXCL12P48061 MUC1-201ENST00000337604 859 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
CXCL12P48061 AC095060.1-201ENST00000502455 549 ntTSL 4 BASIC17.18■□□□□ 0.34
CXCL12P48061 CCDC74BP1-201ENST00000508880 1123 ntBASIC17.18■□□□□ 0.34
CXCL12P48061 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC17.18■□□□□ 0.34
CXCL12P48061 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
CXCL12P48061 LINC01225-203ENST00000563550 1244 ntBASIC17.18■□□□□ 0.34
CXCL12P48061 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CXCL12P48061 AC027307.3-201ENST00000594262 1100 ntBASIC17.18■□□□□ 0.34
CXCL12P48061 AL158211.3-201ENST00000607385 239 ntBASIC17.18■□□□□ 0.34
CXCL12P48061 FKBP4-208ENST00000630279 156 ntTSL 5 BASIC17.18■□□□□ 0.34
CXCL12P48061 IRS2-201ENST00000375856 8138 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CXCL12P48061 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CXCL12P48061 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC17.18■□□□□ 0.34
CXCL12P48061 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC17.18■□□□□ 0.34
CXCL12P48061 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CXCL12P48061 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
CXCL12P48061 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC17.18■□□□□ 0.34
CXCL12P48061 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
CXCL12P48061 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC17.18■□□□□ 0.34
CXCL12P48061 STK10-201ENST00000176763 6060 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CXCL12P48061 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CXCL12P48061 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
CXCL12P48061 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
CXCL12P48061 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
CXCL12P48061 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
CXCL12P48061 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
CXCL12P48061 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC17.17■□□□□ 0.34
CXCL12P48061 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC17.17■□□□□ 0.34
CXCL12P48061 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC17.17■□□□□ 0.34
CXCL12P48061 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC17.17■□□□□ 0.34
CXCL12P48061 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC17.17■□□□□ 0.34
CXCL12P48061 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
CXCL12P48061 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
CXCL12P48061 PRKAG2-AS1-202ENST00000467458 1064 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
CXCL12P48061 AC069120.2-201ENST00000524091 540 ntBASIC17.17■□□□□ 0.34
CXCL12P48061 MMP17-203ENST00000535004 719 ntTSL 3 BASIC17.17■□□□□ 0.34
CXCL12P48061 TMSB15B-204ENST00000540220 665 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
CXCL12P48061 NDUFA4L2-202ENST00000554503 1177 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
CXCL12P48061 TMSB15B-205ENST00000563257 590 ntTSL 4 BASIC17.17■□□□□ 0.34
CXCL12P48061 SECTM1-202ENST00000580437 1030 ntAPPRIS ALT2 TSL 2 BASIC17.17■□□□□ 0.34
CXCL12P48061 AL358472.5-202ENST00000641448 1267 ntBASIC17.17■□□□□ 0.34
CXCL12P48061 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
CXCL12P48061 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
CXCL12P48061 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC17.17■□□□□ 0.34
CXCL12P48061 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC17.17■□□□□ 0.34
CXCL12P48061 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
CXCL12P48061 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
CXCL12P48061 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
CXCL12P48061 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
CXCL12P48061 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CXCL12P48061 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CXCL12P48061 PSMA1-209ENST00000530457 1527 ntTSL 5 BASIC17.16■□□□□ 0.34
CXCL12P48061 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC17.16■□□□□ 0.34
CXCL12P48061 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC17.16■□□□□ 0.34
CXCL12P48061 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC17.16■□□□□ 0.34
CXCL12P48061 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
CXCL12P48061 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
CXCL12P48061 SBNO2-204ENST00000587024 4861 ntAPPRIS ALT2 TSL 2 BASIC17.16■□□□□ 0.34
CXCL12P48061 AP000997.3-201ENST00000623333 2250 ntBASIC17.16■□□□□ 0.34
CXCL12P48061 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CXCL12P48061 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC17.16■□□□□ 0.34
CXCL12P48061 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CXCL12P48061 TNNT3-204ENST00000381558 1258 ntAPPRIS ALT2 TSL 5 BASIC17.16■□□□□ 0.34
CXCL12P48061 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
CXCL12P48061 HMGA1P7-201ENST00000406908 502 ntBASIC17.16■□□□□ 0.34
CXCL12P48061 SPDYE14P-201ENST00000442619 822 ntBASIC17.16■□□□□ 0.34
CXCL12P48061 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC17.16■□□□□ 0.34
CXCL12P48061 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC17.16■□□□□ 0.34
CXCL12P48061 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC17.16■□□□□ 0.34
CXCL12P48061 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC17.16■□□□□ 0.34
CXCL12P48061 MIR210HG-203ENST00000533920 816 ntTSL 2 BASIC17.16■□□□□ 0.34
CXCL12P48061 EEF1AKMT3-204ENST00000551420 836 ntTSL 2 BASIC17.16■□□□□ 0.34
CXCL12P48061 COQ6-210ENST00000554920 649 ntTSL 3 BASIC17.16■□□□□ 0.34
CXCL12P48061 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
CXCL12P48061 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
CXCL12P48061 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
CXCL12P48061 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
CXCL12P48061 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
CXCL12P48061 ENOSF1-202ENST00000340116 1658 ntTSL 5 BASIC17.16■□□□□ 0.34
CXCL12P48061 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
CXCL12P48061 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
CXCL12P48061 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
CXCL12P48061 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC17.15■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 41.8 ms