Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC21.63■■□□□ 1.05
COL5A3P25940 PODN-203ENST00000395871 2744 ntTSL 5 BASIC21.63■■□□□ 1.05
COL5A3P25940 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC21.63■■□□□ 1.05
COL5A3P25940 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC21.63■■□□□ 1.05
COL5A3P25940 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC21.63■■□□□ 1.05
COL5A3P25940 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC21.63■■□□□ 1.05
COL5A3P25940 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
COL5A3P25940 SUMO1-201ENST00000392244 831 ntTSL 2 BASIC21.63■■□□□ 1.05
COL5A3P25940 SUMO1-209ENST00000409712 761 ntTSL 2 BASIC21.63■■□□□ 1.05
COL5A3P25940 LINC00659-201ENST00000412500 540 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
COL5A3P25940 RPUSD3-204ENST00000424438 1005 ntTSL 2 BASIC21.63■■□□□ 1.05
COL5A3P25940 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC21.63■■□□□ 1.05
COL5A3P25940 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
COL5A3P25940 LACTB2-203ENST00000522447 1034 ntAPPRIS P1 TSL 2 BASIC21.63■■□□□ 1.05
COL5A3P25940 TIMM13-202ENST00000591871 631 ntTSL 5 BASIC21.63■■□□□ 1.05
COL5A3P25940 AC025048.6-201ENST00000634326 1161 ntBASIC21.63■■□□□ 1.05
COL5A3P25940 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC21.63■■□□□ 1.05
COL5A3P25940 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC21.63■■□□□ 1.05
COL5A3P25940 BX323043.1-201ENST00000641006 1765 ntBASIC21.62■■□□□ 1.05
COL5A3P25940 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC21.62■■□□□ 1.05
COL5A3P25940 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
COL5A3P25940 AC016027.1-202ENST00000607927 1699 ntBASIC21.62■■□□□ 1.05
COL5A3P25940 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC21.62■■□□□ 1.05
COL5A3P25940 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
COL5A3P25940 TMEM44-201ENST00000330115 1278 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
COL5A3P25940 CALY-202ENST00000368555 783 ntTSL 2 BASIC21.62■■□□□ 1.05
COL5A3P25940 ADIRF-201ENST00000372013 917 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
COL5A3P25940 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC21.62■■□□□ 1.05
COL5A3P25940 GOLGA6L11P-201ENST00000417252 1298 ntBASIC21.62■■□□□ 1.05
COL5A3P25940 ZDHHC20-IT1-201ENST00000417513 440 ntTSL 3 BASIC21.62■■□□□ 1.05
COL5A3P25940 PRKAG2-AS1-202ENST00000467458 1064 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
COL5A3P25940 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC21.62■■□□□ 1.05
COL5A3P25940 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC21.62■■□□□ 1.05
COL5A3P25940 AC027307.2-201ENST00000591252 911 ntBASIC21.62■■□□□ 1.05
COL5A3P25940 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC21.62■■□□□ 1.05
COL5A3P25940 SPDYE12P-201ENST00000618416 771 ntBASIC21.62■■□□□ 1.05
COL5A3P25940 IER3IP1-202ENST00000639845 832 ntTSL 2 BASIC21.62■■□□□ 1.05
COL5A3P25940 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC21.62■■□□□ 1.05
COL5A3P25940 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
COL5A3P25940 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC21.62■■□□□ 1.05
COL5A3P25940 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
COL5A3P25940 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC21.62■■□□□ 1.05
COL5A3P25940 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC21.62■■□□□ 1.05
COL5A3P25940 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC21.62■■□□□ 1.05
COL5A3P25940 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
COL5A3P25940 SCLT1-205ENST00000503401 1604 ntAPPRIS ALT2 TSL 3 BASIC21.61■■□□□ 1.05
COL5A3P25940 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
COL5A3P25940 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
COL5A3P25940 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
COL5A3P25940 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
COL5A3P25940 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
COL5A3P25940 TMPRSS11CP-201ENST00000453277 683 ntBASIC21.61■■□□□ 1.05
COL5A3P25940 NAA50-208ENST00000497255 789 ntTSL 5 BASIC21.61■■□□□ 1.05
COL5A3P25940 SNHG28-203ENST00000621242 708 ntAPPRIS P1 TSL 5 BASIC21.61■■□□□ 1.05
COL5A3P25940 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
COL5A3P25940 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
COL5A3P25940 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC21.61■■□□□ 1.05
COL5A3P25940 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC21.61■■□□□ 1.05
COL5A3P25940 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
COL5A3P25940 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
COL5A3P25940 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
COL5A3P25940 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
COL5A3P25940 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC21.61■■□□□ 1.05
COL5A3P25940 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC21.61■■□□□ 1.05
COL5A3P25940 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
COL5A3P25940 AC142381.1-201ENST00000426099 345 ntBASIC21.6■■□□□ 1.05
COL5A3P25940 RN7SL692P-201ENST00000464677 288 ntBASIC21.6■■□□□ 1.05
COL5A3P25940 ELOF1-205ENST00000589171 743 ntTSL 3 BASIC21.6■■□□□ 1.05
COL5A3P25940 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC21.6■■□□□ 1.05
COL5A3P25940 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
COL5A3P25940 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC21.6■■□□□ 1.05
COL5A3P25940 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC21.6■■□□□ 1.05
COL5A3P25940 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC21.6■■□□□ 1.05
COL5A3P25940 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
COL5A3P25940 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
COL5A3P25940 PRDX5-202ENST00000347941 463 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
COL5A3P25940 COX5BP8-201ENST00000416911 349 ntBASIC21.6■■□□□ 1.05
COL5A3P25940 PIGZ-204ENST00000443835 675 ntTSL 4 BASIC21.6■■□□□ 1.05
COL5A3P25940 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
COL5A3P25940 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC21.6■■□□□ 1.05
COL5A3P25940 TRMT112-206ENST00000544844 1106 ntAPPRIS P3 TSL 1 (best) BASIC21.6■■□□□ 1.05
COL5A3P25940 PPHLN1-221ENST00000552761 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC21.6■■□□□ 1.05
COL5A3P25940 AC116003.1-201ENST00000578340 536 ntTSL 3 BASIC21.6■■□□□ 1.05
COL5A3P25940 AP000894.3-201ENST00000582554 351 ntTSL 5 BASIC21.6■■□□□ 1.05
COL5A3P25940 AC010619.1-201ENST00000599536 675 ntAPPRIS P1 TSL 5 BASIC21.6■■□□□ 1.05
COL5A3P25940 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC21.6■■□□□ 1.05
COL5A3P25940 NMRAL1-201ENST00000283429 1376 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
COL5A3P25940 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC21.6■■□□□ 1.05
COL5A3P25940 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
COL5A3P25940 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
COL5A3P25940 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC21.59■■□□□ 1.05
COL5A3P25940 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC21.59■■□□□ 1.05
COL5A3P25940 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC21.59■■□□□ 1.05
COL5A3P25940 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC21.59■■□□□ 1.05
COL5A3P25940 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
COL5A3P25940 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
COL5A3P25940 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC21.59■■□□□ 1.05
COL5A3P25940 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC21.59■■□□□ 1.05
COL5A3P25940 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC21.59■■□□□ 1.05
COL5A3P25940 GMNN-201ENST00000230056 1262 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 48.9 ms