Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC20.5■□□□□ 0.87
HMGB1P09429 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC20.5■□□□□ 0.87
HMGB1P09429 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
HMGB1P09429 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC20.5■□□□□ 0.87
HMGB1P09429 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
HMGB1P09429 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC20.5■□□□□ 0.87
HMGB1P09429 AL121772.3-201ENST00000610840 674 ntBASIC20.5■□□□□ 0.87
HMGB1P09429 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
HMGB1P09429 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
HMGB1P09429 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
HMGB1P09429 C4orf32-201ENST00000309733 8901 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
HMGB1P09429 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
HMGB1P09429 OLA1-201ENST00000284719 4417 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
HMGB1P09429 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC20.5■□□□□ 0.87
HMGB1P09429 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC20.5■□□□□ 0.87
HMGB1P09429 VPS37A-201ENST00000324849 4906 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
HMGB1P09429 ADAMTS7-201ENST00000388820 5490 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
HMGB1P09429 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
HMGB1P09429 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
HMGB1P09429 METTL21A-203ENST00000411432 4805 ntAPPRIS P1 TSL 2 BASIC20.49■□□□□ 0.87
HMGB1P09429 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
HMGB1P09429 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
HMGB1P09429 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
HMGB1P09429 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
HMGB1P09429 EMD-201ENST00000369835 966 ntTSL 3 BASIC20.49■□□□□ 0.87
HMGB1P09429 AC132008.2-207ENST00000454517 770 ntBASIC20.49■□□□□ 0.87
HMGB1P09429 AC106795.1-205ENST00000512851 1056 ntBASIC20.49■□□□□ 0.87
HMGB1P09429 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC20.49■□□□□ 0.87
HMGB1P09429 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
HMGB1P09429 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC20.49■□□□□ 0.87
HMGB1P09429 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC20.49■□□□□ 0.87
HMGB1P09429 AC080080.1-201ENST00000625121 2420 ntBASIC20.49■□□□□ 0.87
HMGB1P09429 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC20.49■□□□□ 0.87
HMGB1P09429 FGFR1-206ENST00000397091 5702 ntAPPRIS ALT1 TSL 1 (best) BASIC20.49■□□□□ 0.87
HMGB1P09429 EGFEM1P-202ENST00000431685 1563 ntBASIC20.49■□□□□ 0.87
HMGB1P09429 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
HMGB1P09429 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
HMGB1P09429 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
HMGB1P09429 FBF1-205ENST00000586717 4825 ntAPPRIS ALT2 TSL 5 BASIC20.49■□□□□ 0.87
HMGB1P09429 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC20.49■□□□□ 0.87
HMGB1P09429 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC20.49■□□□□ 0.87
HMGB1P09429 ZNF286A-204ENST00000464847 5616 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
HMGB1P09429 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
HMGB1P09429 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC20.49■□□□□ 0.87
HMGB1P09429 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
HMGB1P09429 DMRTA1-201ENST00000325870 5569 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
HMGB1P09429 AC005833.1-201ENST00000280684 4237 ntAPPRIS P1 BASIC20.48■□□□□ 0.87
HMGB1P09429 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
HMGB1P09429 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
HMGB1P09429 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC20.48■□□□□ 0.87
HMGB1P09429 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC20.48■□□□□ 0.87
HMGB1P09429 FAM111A-204ENST00000528737 6189 ntAPPRIS P1 TSL 2 BASIC20.48■□□□□ 0.87
HMGB1P09429 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
HMGB1P09429 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
HMGB1P09429 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC20.48■□□□□ 0.87
HMGB1P09429 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC20.48■□□□□ 0.87
HMGB1P09429 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC20.48■□□□□ 0.87
HMGB1P09429 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC20.48■□□□□ 0.87
HMGB1P09429 ACTG1P4-201ENST00000425123 1122 ntBASIC20.48■□□□□ 0.87
HMGB1P09429 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC20.48■□□□□ 0.87
HMGB1P09429 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
HMGB1P09429 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC20.48■□□□□ 0.87
HMGB1P09429 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC20.48■□□□□ 0.87
HMGB1P09429 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
HMGB1P09429 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
HMGB1P09429 AC148477.5-201ENST00000625164 1645 ntBASIC20.48■□□□□ 0.87
HMGB1P09429 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC20.48■□□□□ 0.87
HMGB1P09429 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
HMGB1P09429 C18orf63-201ENST00000579455 5127 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
HMGB1P09429 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
HMGB1P09429 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC20.48■□□□□ 0.87
HMGB1P09429 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC20.48■□□□□ 0.87
HMGB1P09429 HEBP2-204ENST00000607197 10014 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
HMGB1P09429 EDA-204ENST00000374553 5272 ntAPPRIS ALT1 TSL 1 (best) BASIC20.47■□□□□ 0.87
HMGB1P09429 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
HMGB1P09429 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
HMGB1P09429 RHOBTB1-201ENST00000337910 4473 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
HMGB1P09429 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC20.47■□□□□ 0.87
HMGB1P09429 PCDHA5-202ENST00000529859 5218 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
HMGB1P09429 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
HMGB1P09429 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
HMGB1P09429 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
HMGB1P09429 CACNA1B-205ENST00000371363 9758 ntAPPRIS ALT2 TSL 5 BASIC20.47■□□□□ 0.87
HMGB1P09429 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC20.47■□□□□ 0.87
HMGB1P09429 FOSB-209ENST00000590335 2170 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
HMGB1P09429 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
HMGB1P09429 RBM17P3-201ENST00000417687 1192 ntBASIC20.47■□□□□ 0.87
HMGB1P09429 MAGI2-AS3-208ENST00000446159 670 ntTSL 3 BASIC20.47■□□□□ 0.87
HMGB1P09429 NMU-205ENST00000511469 756 ntTSL 3 BASIC20.47■□□□□ 0.87
HMGB1P09429 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
HMGB1P09429 AC124947.2-201ENST00000547118 1133 ntBASIC20.47■□□□□ 0.87
HMGB1P09429 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC20.47■□□□□ 0.87
HMGB1P09429 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
HMGB1P09429 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC20.47■□□□□ 0.87
HMGB1P09429 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
HMGB1P09429 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
HMGB1P09429 TTLL10-202ENST00000379289 2259 ntAPPRIS P1 TSL 2 BASIC20.47■□□□□ 0.87
HMGB1P09429 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC20.47■□□□□ 0.87
HMGB1P09429 ARID1B-203ENST00000350026 7962 ntAPPRIS P3 TSL 1 (best) BASIC20.47■□□□□ 0.87
HMGB1P09429 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC20.46■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 57.4 ms