Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
LDLRP01130 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC16.84■□□□□ 0.29
LDLRP01130 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC16.84■□□□□ 0.29
LDLRP01130 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
LDLRP01130 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
LDLRP01130 DHX30-205ENST00000445061 4065 ntAPPRIS P2 TSL 1 (best) BASIC16.84■□□□□ 0.29
LDLRP01130 NBPF11-205ENST00000615281 5494 ntAPPRIS P2 TSL 1 (best) BASIC16.84■□□□□ 0.29
LDLRP01130 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
LDLRP01130 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
LDLRP01130 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC16.84■□□□□ 0.29
LDLRP01130 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC16.84■□□□□ 0.29
LDLRP01130 PAPD5-202ENST00000436909 4635 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
LDLRP01130 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
LDLRP01130 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC16.84■□□□□ 0.29
LDLRP01130 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
LDLRP01130 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
LDLRP01130 ADARB1-202ENST00000360697 6604 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
LDLRP01130 TBC1D2-205ENST00000465784 3349 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
LDLRP01130 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
LDLRP01130 RGS12-203ENST00000344733 5469 ntAPPRIS P4 TSL 1 (best) BASIC16.84■□□□□ 0.29
LDLRP01130 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC16.84■□□□□ 0.29
LDLRP01130 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC16.84■□□□□ 0.29
LDLRP01130 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC16.84■□□□□ 0.29
LDLRP01130 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
LDLRP01130 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC16.84■□□□□ 0.29
LDLRP01130 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC16.84■□□□□ 0.29
LDLRP01130 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC16.84■□□□□ 0.29
LDLRP01130 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
LDLRP01130 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
LDLRP01130 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
LDLRP01130 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
LDLRP01130 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC16.83■□□□□ 0.29
LDLRP01130 NF2-202ENST00000338641 6025 ntAPPRIS P4 TSL 1 (best) BASIC16.83■□□□□ 0.29
LDLRP01130 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
LDLRP01130 SGPP1-201ENST00000247225 3312 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
LDLRP01130 REPS1-208ENST00000450536 4537 ntAPPRIS ALT1 TSL 1 (best) BASIC16.83■□□□□ 0.29
LDLRP01130 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
LDLRP01130 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC16.83■□□□□ 0.28
LDLRP01130 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC16.83■□□□□ 0.28
LDLRP01130 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
LDLRP01130 TRIM24-201ENST00000343526 8410 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.28
LDLRP01130 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.28
LDLRP01130 SLC2A10-201ENST00000359271 4389 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
LDLRP01130 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC16.83■□□□□ 0.28
LDLRP01130 UFSP1-201ENST00000388761 996 ntAPPRIS P1 BASIC16.83■□□□□ 0.28
LDLRP01130 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
LDLRP01130 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
LDLRP01130 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
LDLRP01130 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
LDLRP01130 C4orf50-202ENST00000531445 6860 ntAPPRIS P5 TSL 5 BASIC16.83■□□□□ 0.28
LDLRP01130 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC16.83■□□□□ 0.28
LDLRP01130 ORAOV1-210ENST00000539414 817 ntAPPRIS ALT1 TSL 2 BASIC16.83■□□□□ 0.28
LDLRP01130 AK4-207ENST00000545314 6887 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
LDLRP01130 NFATC4-208ENST00000553708 5367 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
LDLRP01130 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC16.83■□□□□ 0.28
LDLRP01130 AC008481.3-201ENST00000585656 727 ntAPPRIS P1 TSL 5 BASIC16.83■□□□□ 0.28
LDLRP01130 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
LDLRP01130 UBALD1-205ENST00000590891 2641 ntBASIC16.83■□□□□ 0.28
LDLRP01130 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC16.83■□□□□ 0.28
LDLRP01130 AC010735.2-201ENST00000607970 584 ntTSL 4 BASIC16.83■□□□□ 0.28
LDLRP01130 TJP1-212ENST00000614355 6977 ntAPPRIS ALT2 TSL 5 BASIC16.83■□□□□ 0.28
LDLRP01130 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC16.83■□□□□ 0.28
LDLRP01130 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
LDLRP01130 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC16.83■□□□□ 0.28
LDLRP01130 STAT5A-201ENST00000345506 4301 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
LDLRP01130 SLC19A2-202ENST00000367804 2976 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
LDLRP01130 PCDHA1-203ENST00000504120 5263 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
LDLRP01130 CCNI2-204ENST00000614847 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
LDLRP01130 STAT3-201ENST00000264657 5047 ntAPPRIS P4 TSL 1 (best) BASIC16.82■□□□□ 0.28
LDLRP01130 C15orf38-AP3S2-201ENST00000398333 2439 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
LDLRP01130 SLC27A2-201ENST00000267842 2394 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
LDLRP01130 SRGAP2B-207ENST00000641863 2367 ntAPPRIS P5 BASIC16.82■□□□□ 0.28
LDLRP01130 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
LDLRP01130 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
LDLRP01130 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
LDLRP01130 NFATC4-231ENST00000557451 5613 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
LDLRP01130 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC16.82■□□□□ 0.28
LDLRP01130 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
LDLRP01130 LINC01126-201ENST00000623515 1646 ntBASIC16.82■□□□□ 0.28
LDLRP01130 KMT5A-202ENST00000402868 3140 ntAPPRIS P2 TSL 1 (best) BASIC16.82■□□□□ 0.28
LDLRP01130 CDS1-201ENST00000295887 4461 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
LDLRP01130 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC16.82■□□□□ 0.28
LDLRP01130 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC16.82■□□□□ 0.28
LDLRP01130 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
LDLRP01130 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
LDLRP01130 KIRREL3-AS3-201ENST00000404882 831 ntBASIC16.82■□□□□ 0.28
LDLRP01130 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
LDLRP01130 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC16.82■□□□□ 0.28
LDLRP01130 PNN-202ENST00000553331 656 ntTSL 3 BASIC16.82■□□□□ 0.28
LDLRP01130 AC084125.4-201ENST00000580385 338 ntTSL 3 BASIC16.82■□□□□ 0.28
LDLRP01130 AC117500.6-201ENST00000624871 588 ntBASIC16.82■□□□□ 0.28
LDLRP01130 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC16.82■□□□□ 0.28
LDLRP01130 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC16.82■□□□□ 0.28
LDLRP01130 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC16.82■□□□□ 0.28
LDLRP01130 HIBCH-202ENST00000392332 2463 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
LDLRP01130 PPP1R3E-201ENST00000452015 4773 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
LDLRP01130 ARHGEF40-201ENST00000298694 5919 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
LDLRP01130 ANTXR1-201ENST00000303714 5859 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
LDLRP01130 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
LDLRP01130 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 28.3 ms