Protein–RNA interactions for Protein: O43490

PROM1, Prominin-1, humanhuman

Predictions only

Length 865 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PROM1O43490 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
PROM1O43490 DUSP4-201ENST00000240100 5537 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
PROM1O43490 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
PROM1O43490 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
PROM1O43490 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
PROM1O43490 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
PROM1O43490 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC16.53■□□□□ 0.24
PROM1O43490 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC16.53■□□□□ 0.24
PROM1O43490 IGHV3OR16-7-201ENST00000604106 360 ntBASIC16.53■□□□□ 0.24
PROM1O43490 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC16.53■□□□□ 0.24
PROM1O43490 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC16.53■□□□□ 0.24
PROM1O43490 AP000867.4-201ENST00000641616 219 ntBASIC16.53■□□□□ 0.24
PROM1O43490 AC132938.5-201ENST00000624980 1813 ntBASIC16.53■□□□□ 0.24
PROM1O43490 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
PROM1O43490 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
PROM1O43490 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
PROM1O43490 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC16.53■□□□□ 0.24
PROM1O43490 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
PROM1O43490 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC16.53■□□□□ 0.24
PROM1O43490 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
PROM1O43490 AC016396.2-201ENST00000562575 1417 ntBASIC16.53■□□□□ 0.24
PROM1O43490 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
PROM1O43490 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC16.53■□□□□ 0.24
PROM1O43490 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC16.53■□□□□ 0.24
PROM1O43490 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC16.52■□□□□ 0.24
PROM1O43490 AL023806.1-201ENST00000603994 1649 ntBASIC16.52■□□□□ 0.24
PROM1O43490 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC16.52■□□□□ 0.24
PROM1O43490 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC16.52■□□□□ 0.24
PROM1O43490 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.24
PROM1O43490 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
PROM1O43490 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC16.52■□□□□ 0.24
PROM1O43490 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC16.52■□□□□ 0.24
PROM1O43490 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC16.52■□□□□ 0.24
PROM1O43490 SRP19-202ENST00000445150 833 ntTSL 2 BASIC16.52■□□□□ 0.24
PROM1O43490 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.24
PROM1O43490 SKP2-204ENST00000508514 821 ntTSL 3 BASIC16.52■□□□□ 0.24
PROM1O43490 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC16.52■□□□□ 0.24
PROM1O43490 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
PROM1O43490 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
PROM1O43490 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC16.52■□□□□ 0.24
PROM1O43490 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC16.52■□□□□ 0.24
PROM1O43490 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
PROM1O43490 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC16.52■□□□□ 0.24
PROM1O43490 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
PROM1O43490 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
PROM1O43490 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
PROM1O43490 OPRK1-205ENST00000612786 5196 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
PROM1O43490 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
PROM1O43490 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
PROM1O43490 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
PROM1O43490 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
PROM1O43490 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC16.52■□□□□ 0.23
PROM1O43490 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
PROM1O43490 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
PROM1O43490 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
PROM1O43490 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
PROM1O43490 SERPINB6-207ENST00000612421 1570 ntTSL 2 BASIC16.51■□□□□ 0.23
PROM1O43490 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
PROM1O43490 FO681492.1-201ENST00000623662 5321 ntAPPRIS P5 TSL 2 BASIC16.51■□□□□ 0.23
PROM1O43490 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
PROM1O43490 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC16.51■□□□□ 0.23
PROM1O43490 AC108860.2-201ENST00000562760 2183 ntBASIC16.51■□□□□ 0.23
PROM1O43490 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
PROM1O43490 HCN1-201ENST00000303230 9885 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
PROM1O43490 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC16.51■□□□□ 0.23
PROM1O43490 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC16.51■□□□□ 0.23
PROM1O43490 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
PROM1O43490 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
PROM1O43490 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
PROM1O43490 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
PROM1O43490 SOD2-201ENST00000337404 991 ntTSL 2 BASIC16.51■□□□□ 0.23
PROM1O43490 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
PROM1O43490 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
PROM1O43490 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC16.51■□□□□ 0.23
PROM1O43490 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
PROM1O43490 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
PROM1O43490 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC16.51■□□□□ 0.23
PROM1O43490 NKTR-203ENST00000442970 646 ntTSL 2 BASIC16.51■□□□□ 0.23
PROM1O43490 ABCD1P5-201ENST00000445663 754 ntBASIC16.51■□□□□ 0.23
PROM1O43490 AC132008.2-207ENST00000454517 770 ntBASIC16.51■□□□□ 0.23
PROM1O43490 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC16.51■□□□□ 0.23
PROM1O43490 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC16.51■□□□□ 0.23
PROM1O43490 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC16.51■□□□□ 0.23
PROM1O43490 PRR29-207ENST00000580752 458 ntTSL 3 BASIC16.51■□□□□ 0.23
PROM1O43490 AL121772.3-201ENST00000610840 674 ntBASIC16.51■□□□□ 0.23
PROM1O43490 AC073592.5-201ENST00000624854 528 ntBASIC16.51■□□□□ 0.23
PROM1O43490 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC16.51■□□□□ 0.23
PROM1O43490 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
PROM1O43490 MAP7-209ENST00000618822 4497 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
PROM1O43490 MOV10L1-203ENST00000395852 1422 ntTSL 2 BASIC16.51■□□□□ 0.23
PROM1O43490 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC16.51■□□□□ 0.23
PROM1O43490 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
PROM1O43490 BANP-227ENST00000626016 2144 ntTSL 2 BASIC16.51■□□□□ 0.23
PROM1O43490 CDH23-205ENST00000398809 4533 ntTSL 5 BASIC16.51■□□□□ 0.23
PROM1O43490 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
PROM1O43490 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
PROM1O43490 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
PROM1O43490 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC16.5■□□□□ 0.23
PROM1O43490 ARHGAP35-201ENST00000404338 8889 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
PROM1O43490 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 25.4 ms