Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC19.48■□□□□ 0.71
MSH4O15457 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC19.48■□□□□ 0.71
MSH4O15457 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC19.48■□□□□ 0.71
MSH4O15457 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC19.48■□□□□ 0.71
MSH4O15457 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
MSH4O15457 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC19.48■□□□□ 0.71
MSH4O15457 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC19.48■□□□□ 0.71
MSH4O15457 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC19.47■□□□□ 0.71
MSH4O15457 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC19.47■□□□□ 0.71
MSH4O15457 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC19.47■□□□□ 0.71
MSH4O15457 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
MSH4O15457 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
MSH4O15457 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
MSH4O15457 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
MSH4O15457 AR-207ENST00000612010 3896 ntTSL 5 BASIC19.47■□□□□ 0.71
MSH4O15457 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC19.47■□□□□ 0.71
MSH4O15457 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
MSH4O15457 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC19.47■□□□□ 0.71
MSH4O15457 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC19.47■□□□□ 0.71
MSH4O15457 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC19.47■□□□□ 0.71
MSH4O15457 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC19.47■□□□□ 0.71
MSH4O15457 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC19.47■□□□□ 0.71
MSH4O15457 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC19.47■□□□□ 0.71
MSH4O15457 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
MSH4O15457 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC19.47■□□□□ 0.71
MSH4O15457 PGM5P2-202ENST00000637225 1043 ntBASIC19.47■□□□□ 0.71
MSH4O15457 AL805961.1-202ENST00000641562 540 ntBASIC19.47■□□□□ 0.71
MSH4O15457 AC104109.2-201ENST00000602919 1418 ntBASIC19.47■□□□□ 0.71
MSH4O15457 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC19.47■□□□□ 0.71
MSH4O15457 KLK6-202ENST00000376851 1708 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
MSH4O15457 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC19.47■□□□□ 0.71
MSH4O15457 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC19.47■□□□□ 0.71
MSH4O15457 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC19.47■□□□□ 0.71
MSH4O15457 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC19.47■□□□□ 0.71
MSH4O15457 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC19.47■□□□□ 0.71
MSH4O15457 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC19.47■□□□□ 0.71
MSH4O15457 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC19.47■□□□□ 0.71
MSH4O15457 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC19.47■□□□□ 0.71
MSH4O15457 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC19.47■□□□□ 0.71
MSH4O15457 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
MSH4O15457 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC19.46■□□□□ 0.71
MSH4O15457 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC19.46■□□□□ 0.71
MSH4O15457 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC19.46■□□□□ 0.71
MSH4O15457 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC19.46■□□□□ 0.71
MSH4O15457 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
MSH4O15457 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC19.46■□□□□ 0.71
MSH4O15457 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC19.46■□□□□ 0.71
MSH4O15457 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC19.46■□□□□ 0.71
MSH4O15457 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC19.46■□□□□ 0.71
MSH4O15457 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC19.46■□□□□ 0.71
MSH4O15457 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC19.46■□□□□ 0.71
MSH4O15457 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
MSH4O15457 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC19.46■□□□□ 0.71
MSH4O15457 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC19.46■□□□□ 0.71
MSH4O15457 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
MSH4O15457 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
MSH4O15457 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC19.46■□□□□ 0.71
MSH4O15457 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
MSH4O15457 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
MSH4O15457 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
MSH4O15457 AC009947.1-201ENST00000444350 727 ntBASIC19.46■□□□□ 0.71
MSH4O15457 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC19.46■□□□□ 0.71
MSH4O15457 AC034105.1-201ENST00000563488 319 ntBASIC19.46■□□□□ 0.71
MSH4O15457 AC106730.1-201ENST00000566722 1090 ntBASIC19.46■□□□□ 0.71
MSH4O15457 AC055811.1-201ENST00000584203 1231 ntTSL 5 BASIC19.46■□□□□ 0.71
MSH4O15457 IQSEC2-210ENST00000639161 936 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
MSH4O15457 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC19.46■□□□□ 0.71
MSH4O15457 C2orf81-202ENST00000612891 1902 ntAPPRIS ALT2 TSL 5 BASIC19.46■□□□□ 0.71
MSH4O15457 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
MSH4O15457 TLE4-205ENST00000376544 4871 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
MSH4O15457 ADCY6-206ENST00000550422 5877 ntTSL 2 BASIC19.46■□□□□ 0.71
MSH4O15457 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
MSH4O15457 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
MSH4O15457 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
MSH4O15457 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
MSH4O15457 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC19.46■□□□□ 0.71
MSH4O15457 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC19.46■□□□□ 0.71
MSH4O15457 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
MSH4O15457 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
MSH4O15457 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC19.45■□□□□ 0.7
MSH4O15457 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC19.45■□□□□ 0.7
MSH4O15457 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
MSH4O15457 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC19.45■□□□□ 0.7
MSH4O15457 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
MSH4O15457 ANHX-201ENST00000419717 1765 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
MSH4O15457 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
MSH4O15457 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
MSH4O15457 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
MSH4O15457 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC19.45■□□□□ 0.7
MSH4O15457 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC19.45■□□□□ 0.7
MSH4O15457 IGHV3-65-201ENST00000523210 341 ntBASIC19.45■□□□□ 0.7
MSH4O15457 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC19.45■□□□□ 0.7
MSH4O15457 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
MSH4O15457 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC19.45■□□□□ 0.7
MSH4O15457 AC008667.4-201ENST00000607370 168 ntBASIC19.45■□□□□ 0.7
MSH4O15457 Z83851.2-201ENST00000609564 659 ntBASIC19.45■□□□□ 0.7
MSH4O15457 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC19.45■□□□□ 0.7
MSH4O15457 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
MSH4O15457 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
MSH4O15457 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC19.45■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 40.7 ms